RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 RRAGDQ9NQL2 400 aaPredicted RBP12.33□□□□□ -0.44
CAPN3-201ENST00000318023 DIP2AQ14689 1571 aa12.33□□□□□ -0.44
CAPN3-201ENST00000318023 ILDR2Q71H61 639 aa12.33□□□□□ -0.44
CAPN3-201ENST00000318023 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.33□□□□□ -0.44
CAPN3-201ENST00000318023 NAP1L5Q96NT1 182 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-201ENST00000318023 CABP1Q9NZU7 370 aa12.32□□□□□ -0.44
CAPN3-201ENST00000318023 PTCH1Q13635 1447 aa12.32□□□□□ -0.44
CAPN3-201ENST00000318023 FAM135BQ49AJ0 1406 aa12.32□□□□□ -0.44
CAPN3-201ENST00000318023 RBM10P98175 930 aaKnown RBP12.32□□□□□ -0.44
CAPN3-201ENST00000318023 NWD1Q149M9 1564 aa12.32□□□□□ -0.44
CAPN3-201ENST00000318023 ROBO1Q9Y6N7 1651 aa12.32□□□□□ -0.44
CAPN3-201ENST00000318023 LRRC59Q96AG4 307 aaKnown RBP12.31□□□□□ -0.44
CAPN3-201ENST00000318023 NRXN1Q9ULB1 1477 aa12.3□□□□□ -0.44
CAPN3-201ENST00000318023 NGLY1Q96IV0 654 aa12.3□□□□□ -0.44
CAPN3-201ENST00000318023 STAC3Q96MF2 364 aa12.3□□□□□ -0.44
CAPN3-201ENST00000318023 XRN1Q8IZH2 1706 aaKnown RBP12.3□□□□□ -0.44
CAPN3-201ENST00000318023 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.3□□□□□ -0.44
CAPN3-201ENST00000318023 NPHP3Q7Z494 1330 aa12.29□□□□□ -0.44
CAPN3-201ENST00000318023 IQSEC2Q5JU85 1478 aa12.29□□□□□ -0.44
CAPN3-201ENST00000318023 ADGRB1O14514 1584 aa12.29□□□□□ -0.44
CAPN3-201ENST00000318023 PDE4AP27815 886 aa12.29□□□□□ -0.44
CAPN3-201ENST00000318023 NALCNQ8IZF0 1738 aa12.28□□□□□ -0.44
CAPN3-201ENST00000318023 SLC12A5Q9H2X9 1139 aa12.28□□□□□ -0.44
CAPN3-201ENST00000318023 CCDC9Q9Y3X0 531 aaKnown RBP12.28□□□□□ -0.44
CAPN3-201ENST00000318023 IFT172Q9UG01 1749 aa12.27□□□□□ -0.44
CAPN3-201ENST00000318023 ACEP12821 1306 aa12.27□□□□□ -0.44
CAPN3-201ENST00000318023 HSP90AA1P07900 732 aaKnown RBP12.27□□□□□ -0.44
CAPN3-201ENST00000318023 ZC3H6P61129 1189 aaKnown RBP12.27□□□□□ -0.44
CAPN3-201ENST00000318023 CCDC61Q9Y6R9 512 aa12.27□□□□□ -0.44
CAPN3-201ENST00000318023 SETD1AO15047 1707 aaKnown RBP12.27□□□□□ -0.45
CAPN3-201ENST00000318023 ZBED9Q6R2W3 1325 aa12.26□□□□□ -0.45
CAPN3-201ENST00000318023 A0A0G2JS52 829 aa12.26□□□□□ -0.45
CAPN3-201ENST00000318023 JCADQ9P266 1359 aa12.26□□□□□ -0.45
CAPN3-201ENST00000318023 RRP9O43818 475 aaKnown RBP12.26□□□□□ -0.45
CAPN3-201ENST00000318023 AAMPQ13685 434 aa12.26□□□□□ -0.45
CAPN3-201ENST00000318023 CHRNA2Q15822 529 aa12.26□□□□□ -0.45
CAPN3-201ENST00000318023 TECPR2O15040 1411 aa12.26□□□□□ -0.45
CAPN3-201ENST00000318023 EVC2Q86UK5 1308 aa12.25□□□□□ -0.45
CAPN3-201ENST00000318023 ABTB2Q8N961 1025 aa12.25□□□□□ -0.45
CAPN3-201ENST00000318023 FRAT2O75474 233 aaPredicted RBP12.25□□□□□ -0.45
CAPN3-201ENST00000318023 ARXQ96QS3 562 aa12.25□□□□□ -0.45
CAPN3-201ENST00000318023 MRS2Q9HD23 443 aa12.25□□□□□ -0.45
CAPN3-201ENST00000318023 NCOA3Q9Y6Q9 1424 aa12.25□□□□□ -0.45
CAPN3-201ENST00000318023 POTEAQ6S8J7 498 aa12.24□□□□□ -0.45
CAPN3-201ENST00000318023 SIRT1Q96EB6 747 aa12.24□□□□□ -0.45
CAPN3-201ENST00000318023 ZRANB1Q9UGI0 708 aa12.24□□□□□ -0.45
CAPN3-201ENST00000318023 GPRASP1Q5JY77 1395 aa12.24□□□□□ -0.45
CAPN3-201ENST00000318023 USP47Q96K76 1375 aa12.24□□□□□ -0.45
CAPN3-201ENST00000318023 RGS17Q9UGC6 210 aaPredicted RBP12.24□□□□□ -0.45
CAPN3-201ENST00000318023 FBLN1P23142 703 aa12.23□□□□□ -0.45
CAPN3-201ENST00000318023 BACH2Q9BYV9 841 aa12.23□□□□□ -0.45
CAPN3-201ENST00000318023 HSPA5P11021 654 aaKnown RBP12.22□□□□□ -0.45
CAPN3-201ENST00000318023 FGD1P98174 961 aa12.22□□□□□ -0.45
CAPN3-201ENST00000318023 DCCP43146 1447 aa12.22□□□□□ -0.45
CAPN3-201ENST00000318023 SOS2Q07890 1332 aaPredicted RBP12.22□□□□□ -0.45
CAPN3-201ENST00000318023 SKAP1Q86WV1 359 aa12.22□□□□□ -0.45
CAPN3-201ENST00000318023 AFF2P51816 1311 aa12.22□□□□□ -0.45
CAPN3-201ENST00000318023 NLRP6P59044 892 aa12.22□□□□□ -0.45
CAPN3-201ENST00000318023 EIF3AQ14152 1382 aaKnown RBP12.21□□□□□ -0.45
CAPN3-201ENST00000318023 STRN4Q9NRL3 753 aa12.21□□□□□ -0.45
CAPN3-201ENST00000318023 PHLPP1O60346 1717 aa12.21□□□□□ -0.45
CAPN3-201ENST00000318023 PPIP5K1Q6PFW1 1433 aa12.21□□□□□ -0.45
CAPN3-201ENST00000318023 PNNQ9H307 717 aaKnown RBP12.2□□□□□ -0.46
CAPN3-201ENST00000318023 PDE4CQ08493 712 aa12.2□□□□□ -0.46
CAPN3-201ENST00000318023 SPATA31A3Q5VYP0 1347 aa12.2□□□□□ -0.46
CAPN3-201ENST00000318023 PNPLA6Q8IY17 1366 aa12.2□□□□□ -0.46
CAPN3-201ENST00000318023 TNNT2P45379 298 aaPredicted RBP12.19□□□□□ -0.46
CAPN3-201ENST00000318023 TCERG1O14776 1098 aaKnown RBP12.19□□□□□ -0.46
CAPN3-201ENST00000318023 EIF4G2P78344 907 aaKnown RBP eCLIP12.19□□□□□ -0.46
CAPN3-201ENST00000318023 PRDM11Q9NQV5 511 aa12.19□□□□□ -0.46
CAPN3-201ENST00000318023 USP21Q9UK80 565 aa12.19□□□□□ -0.46
CAPN3-201ENST00000318023 LRP6O75581 1613 aa12.18□□□□□ -0.46
CAPN3-201ENST00000318023 TESK2Q96S53 571 aa12.18□□□□□ -0.46
CAPN3-201ENST00000318023 QTRT2Q9H974 415 aaKnown RBP12.18□□□□□ -0.46
CAPN3-201ENST00000318023 EP400Q96L91 3159 aa12.18□□□□□ -0.46
CAPN3-201ENST00000318023 RGPD8O14715 1765 aaPredicted RBP12.18□□□□□ -0.46
CAPN3-201ENST00000318023 NME9Q86XW9 330 aa12.18□□□□□ -0.46
CAPN3-201ENST00000318023 TMF1P82094 1093 aa12.18□□□□□ -0.46
CAPN3-201ENST00000318023 DDRGK1Q96HY6 314 aa12.18□□□□□ -0.46
CAPN3-201ENST00000318023 LAMC1P11047 1609 aa12.17□□□□□ -0.46
CAPN3-201ENST00000318023 RGS3P49796 1198 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 BTG4Q9NY30 223 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 CDC42BPGQ6DT37 1551 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 SPATA31A6Q5VVP1 1343 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 ATP7BP35670 1465 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 RALGAPBQ86X10 1494 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 FAM83GA6ND36 823 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 NUDCQ9Y266 331 aa12.16□□□□□ -0.46
CAPN3-201ENST00000318023 MED1Q15648 1581 aaPredicted RBP12.15□□□□□ -0.46
CAPN3-201ENST00000318023 FAM182BQ5T319 152 aa12.15□□□□□ -0.46
CAPN3-201ENST00000318023 LTV1Q96GA3 475 aaPredicted RBP12.15□□□□□ -0.46
CAPN3-201ENST00000318023 TRPM1Q7Z4N2 1603 aa12.15□□□□□ -0.46
CAPN3-201ENST00000318023 GGNBP2Q9H3C7 697 aa12.15□□□□□ -0.46
CAPN3-201ENST00000318023 ARHGEF28Q8N1W1 1705 aaKnown RBP12.15□□□□□ -0.47
CAPN3-201ENST00000318023 DLC1Q96QB1 1528 aa12.14□□□□□ -0.47
CAPN3-201ENST00000318023 HDGFL2Q7Z4V5 671 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-201ENST00000318023 EXOC6Q8TAG9 804 aa12.14□□□□□ -0.47
CAPN3-201ENST00000318023 COL16A1Q07092 1604 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-201ENST00000318023 KTN1Q86UP2 1357 aaKnown RBP12.14□□□□□ -0.47
CAPN3-201ENST00000318023 SMG6Q86US8 1419 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms