RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 CCDC27Q2M243 656 aa13.15□□□□□ -0.3
COL3A1-202ENST00000317840 CLTCL1P53675 1640 aa13.15□□□□□ -0.3
COL3A1-202ENST00000317840 PRKAR2BP31323 418 aa13.15□□□□□ -0.3
COL3A1-202ENST00000317840 THUMPD2Q9BTF0 503 aaKnown RBP13.15□□□□□ -0.3
COL3A1-202ENST00000317840 NCLP19338 710 aaKnown RBP13.14□□□□□ -0.31
COL3A1-202ENST00000317840 CT47B1P0C2W7 299 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-202ENST00000317840 ANP32BQ92688 251 aaKnown RBP13.14□□□□□ -0.31
COL3A1-202ENST00000317840 RPGRIP1LQ68CZ1 1315 aa13.14□□□□□ -0.31
COL3A1-202ENST00000317840 GBP4Q96PP9 640 aa13.14□□□□□ -0.31
COL3A1-202ENST00000317840 GOLGA6L22H0YM25 854 aa13.13□□□□□ -0.31
COL3A1-202ENST00000317840 RSPH6AQ9H0K4 717 aa13.13□□□□□ -0.31
COL3A1-202ENST00000317840 CHMP4BQ9H444 224 aaKnown RBP13.13□□□□□ -0.31
COL3A1-202ENST00000317840 DDX11L8A8MPP1 907 aa13.13□□□□□ -0.31
COL3A1-202ENST00000317840 COG3Q96JB2 828 aa13.12□□□□□ -0.31
COL3A1-202ENST00000317840 NCKAP5LQ9HCH0 1330 aa13.11□□□□□ -0.31
COL3A1-202ENST00000317840 CHD1LQ86WJ1 897 aa13.11□□□□□ -0.31
COL3A1-202ENST00000317840 ANKRD36BQ8N2N9 1353 aa13.11□□□□□ -0.31
COL3A1-202ENST00000317840 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL3A1-202ENST00000317840 CLASP1Q7Z460 1538 aa13.11□□□□□ -0.31
COL3A1-202ENST00000317840 FYB1O15117 783 aa13.11□□□□□ -0.31
COL3A1-202ENST00000317840 PRKCSHP14314 528 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-202ENST00000317840 PANK2Q9BZ23 570 aa13.11□□□□□ -0.31
COL3A1-202ENST00000317840 SBNO2Q9Y2G9 1366 aa13.1□□□□□ -0.31
COL3A1-202ENST00000317840 ZFYVE16Q7Z3T8 1539 aa13.1□□□□□ -0.31
COL3A1-202ENST00000317840 RNF17Q9BXT8 1623 aaKnown RBP13.1□□□□□ -0.31
COL3A1-202ENST00000317840 HDAC1Q13547 482 aaPredicted RBP13.1□□□□□ -0.31
COL3A1-202ENST00000317840 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
COL3A1-202ENST00000317840 ANTXR1Q9H6X2 564 aa13.1□□□□□ -0.31
COL3A1-202ENST00000317840 IQGAP1P46940 1657 aa13.09□□□□□ -0.31
COL3A1-202ENST00000317840 XRCC6P12956 609 aaKnown RBP eCLIP13.09□□□□□ -0.31
COL3A1-202ENST00000317840 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
COL3A1-202ENST00000317840 TRIM35Q9UPQ4 493 aa13.09□□□□□ -0.31
COL3A1-202ENST00000317840 NPATQ14207 1427 aa13.09□□□□□ -0.31
COL3A1-202ENST00000317840 POGZQ7Z3K3 1410 aa13.09□□□□□ -0.31
COL3A1-202ENST00000317840 AMPHP49418 695 aa13.08□□□□□ -0.32
COL3A1-202ENST00000317840 PHF23Q9BUL5 403 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-202ENST00000317840 SPHKAPQ2M3C7 1700 aa13.08□□□□□ -0.32
COL3A1-202ENST00000317840 A0A1W2PP64 1363 aa13.08□□□□□ -0.32
COL3A1-202ENST00000317840 SMC5Q8IY18 1101 aa13.07□□□□□ -0.32
COL3A1-202ENST00000317840 ZBTB40Q9NUA8 1239 aa13.07□□□□□ -0.32
COL3A1-202ENST00000317840 A0A0G2JS52 829 aa13.07□□□□□ -0.32
COL3A1-202ENST00000317840 MRE11P49959 708 aa13.07□□□□□ -0.32
COL3A1-202ENST00000317840 MYOM2P54296 1465 aa13.07□□□□□ -0.32
COL3A1-202ENST00000317840 NSD2O96028 1365 aa13.07□□□□□ -0.32
COL3A1-202ENST00000317840 FCHSD2O94868 740 aa13.06□□□□□ -0.32
COL3A1-202ENST00000317840 NME9Q86XW9 330 aa13.06□□□□□ -0.32
COL3A1-202ENST00000317840 ZRANB1Q9UGI0 708 aa13.06□□□□□ -0.32
COL3A1-202ENST00000317840 NUDT16Q96DE0 195 aaKnown RBP13.06□□□□□ -0.32
COL3A1-202ENST00000317840 MAP3K4Q9Y6R4 1608 aa13.06□□□□□ -0.32
COL3A1-202ENST00000317840 TET3O43151 1660 aa13.05□□□□□ -0.32
COL3A1-202ENST00000317840 TSPOAP1O95153 1857 aa13.05□□□□□ -0.32
COL3A1-202ENST00000317840 GNAI1P63096 354 aa13.05□□□□□ -0.32
COL3A1-202ENST00000317840 NUCB1Q02818 461 aa13.05□□□□□ -0.32
COL3A1-202ENST00000317840 TWISTNBQ3B726 338 aaPredicted RBP13.05□□□□□ -0.32
COL3A1-202ENST00000317840 RRAGDQ9NQL2 400 aaPredicted RBP13.05□□□□□ -0.32
COL3A1-202ENST00000317840 ATAD2Q6PL18 1390 aa13.05□□□□□ -0.32
COL3A1-202ENST00000317840 HAP1P54257 671 aaPredicted RBP13.05□□□□□ -0.32
COL3A1-202ENST00000317840 DDX49Q9Y6V7 483 aaKnown RBP13.05□□□□□ -0.32
COL3A1-202ENST00000317840 CASC1Q6TDU7 716 aa13.04□□□□□ -0.32
COL3A1-202ENST00000317840 GRPEL1Q9HAV7 217 aa13.04□□□□□ -0.32
COL3A1-202ENST00000317840 ABCA6Q8N139 1617 aa13.04□□□□□ -0.32
COL3A1-202ENST00000317840 TNPO1Q92973 898 aaKnown RBP13.04□□□□□ -0.32
COL3A1-202ENST00000317840 GCC1Q96CN9 775 aa13.04□□□□□ -0.32
COL3A1-202ENST00000317840 EMILIN1Q9Y6C2 1016 aa13.04□□□□□ -0.32
COL3A1-202ENST00000317840 ABCC11Q96J66 1382 aa13.03□□□□□ -0.32
COL3A1-202ENST00000317840 XPCQ01831 940 aaPredicted RBP13.03□□□□□ -0.32
COL3A1-202ENST00000317840 DCTN1Q14203 1278 aa13.03□□□□□ -0.32
COL3A1-202ENST00000317840 TSPYL6Q8N831 410 aa13.03□□□□□ -0.32
COL3A1-202ENST00000317840 RBM42Q9BTD8 480 aaKnown RBP13.03□□□□□ -0.32
COL3A1-202ENST00000317840 ALDH1L2Q3SY69 923 aa13.03□□□□□ -0.32
COL3A1-202ENST00000317840 PHACTR3Q96KR7 559 aa13.03□□□□□ -0.32
COL3A1-202ENST00000317840 PLEKHF1Q96S99 279 aa13.03□□□□□ -0.32
COL3A1-202ENST00000317840 SHROOM2Q13796 1616 aa13.02□□□□□ -0.32
COL3A1-202ENST00000317840 NLRP6P59044 892 aa13.02□□□□□ -0.32
COL3A1-202ENST00000317840 NFE2L2Q16236 605 aa13.02□□□□□ -0.33
COL3A1-202ENST00000317840 SLC4A10Q6U841 1118 aa13.02□□□□□ -0.33
COL3A1-202ENST00000317840 API5Q9BZZ5 524 aaKnown RBP13.02□□□□□ -0.33
COL3A1-202ENST00000317840 IL16Q14005 1332 aa13.02□□□□□ -0.33
COL3A1-202ENST00000317840 BMP2KLQ5H9B9 411 aa13.02□□□□□ -0.33
COL3A1-202ENST00000317840 TBC1D9Q6ZT07 1266 aa13.02□□□□□ -0.33
COL3A1-202ENST00000317840 CEP152O94986 1710 aa13.02□□□□□ -0.33
COL3A1-202ENST00000317840 CDC45O75419 566 aa13.01□□□□□ -0.33
COL3A1-202ENST00000317840 LMOD3Q0VAK6 560 aa13.01□□□□□ -0.33
COL3A1-202ENST00000317840 FOXD4L5Q5VV16 416 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-202ENST00000317840 THEMISQ8N1K5 641 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-202ENST00000317840 FOXD4L4Q8WXT5 416 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-202ENST00000317840 RTF1Q92541 710 aaKnown RBP13.01□□□□□ -0.33
COL3A1-202ENST00000317840 K7ELQ4 463 aaPredicted RBP13.01□□□□□ -0.33
COL3A1-202ENST00000317840 NECTIN2Q92692 538 aa13.01□□□□□ -0.33
COL3A1-202ENST00000317840 AMOTL2Q9Y2J4 779 aa13.01□□□□□ -0.33
COL3A1-202ENST00000317840 TPRNQ4KMQ1 711 aa13.01□□□□□ -0.33
COL3A1-202ENST00000317840 PUS7Q96PZ0 661 aaKnown RBP13.01□□□□□ -0.33
COL3A1-202ENST00000317840 CCDC61Q9Y6R9 512 aa13.01□□□□□ -0.33
COL3A1-202ENST00000317840 KIF1BO60333 1816 aa13□□□□□ -0.33
COL3A1-202ENST00000317840 ZMYM3Q14202 1370 aa13□□□□□ -0.33
COL3A1-202ENST00000317840 FAM83GA6ND36 823 aa13□□□□□ -0.33
COL3A1-202ENST00000317840 SKOR2Q2VWA4 1001 aaPredicted RBP13□□□□□ -0.33
COL3A1-202ENST00000317840 MYOM1P52179 1685 aa13□□□□□ -0.33
COL3A1-202ENST00000317840 POLKQ9UBT6 870 aa12.99□□□□□ -0.33
COL3A1-202ENST00000317840 WASLO00401 505 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms