RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 NF2P35240 595 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 ERICH2A1L162 156 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 CFAP45Q9UL16 551 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 SHTN1A0MZ66 631 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 GTF2E1P29083 439 aaPredicted RBP10.38□□□□□ -0.75
USF3-201ENST00000316407 ME1P48163 572 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 CHMP4CQ96CF2 233 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 VPS37DQ86XT2 251 aa10.38□□□□□ -0.75
USF3-201ENST00000316407 CCDC113Q9H0I3 377 aa10.37□□□□□ -0.75
USF3-201ENST00000316407 FILIP1LQ4L180 1135 aa10.37□□□□□ -0.75
USF3-201ENST00000316407 PPFIBP1Q86W92 1011 aa10.37□□□□□ -0.75
USF3-201ENST00000316407 ZNF428Q96B54 188 aa10.37□□□□□ -0.75
USF3-201ENST00000316407 MNAT1P51948 309 aa10.37□□□□□ -0.75
USF3-201ENST00000316407 NINLQ9Y2I6 1382 aa10.37□□□□□ -0.75
USF3-201ENST00000316407 FKBP5Q13451 457 aaPredicted RBP10.36□□□□□ -0.75
USF3-201ENST00000316407 ROCK1Q13464 1354 aa10.36□□□□□ -0.75
USF3-201ENST00000316407 DHX57Q6P158 1386 aaKnown RBP10.36□□□□□ -0.75
USF3-201ENST00000316407 MAP4K4O95819 1239 aaPredicted RBP10.36□□□□□ -0.75
USF3-201ENST00000316407 RALYLQ86SE5 291 aaKnown RBP10.36□□□□□ -0.75
USF3-201ENST00000316407 BACH2Q9BYV9 841 aa10.36□□□□□ -0.75
USF3-201ENST00000316407 ZNHIT6Q9NWK9 470 aaKnown RBP10.36□□□□□ -0.75
USF3-201ENST00000316407 UBXN4Q92575 508 aa10.36□□□□□ -0.75
USF3-201ENST00000316407 VGLL3A8MV65 326 aa10.36□□□□□ -0.75
USF3-201ENST00000316407 PAXIP1Q6ZW49 1069 aaPredicted RBP10.36□□□□□ -0.75
USF3-201ENST00000316407 TIGD1Q96MW7 591 aa10.36□□□□□ -0.75
USF3-201ENST00000316407 LRRFIP1Q32MZ4 808 aaKnown RBP10.35□□□□□ -0.75
USF3-201ENST00000316407 CCDC18Q5T9S5 1454 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 STK38Q15208 465 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 CRACR2AQ9BSW2 395 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 BRMS1Q9HCU9 246 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 LMAN1P49257 510 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 NOL10Q9BSC4 688 aaKnown RBP10.35□□□□□ -0.75
USF3-201ENST00000316407 PSMA5P28066 241 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 DNA2P51530 1060 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 FAM107BQ9H098 131 aa10.35□□□□□ -0.75
USF3-201ENST00000316407 GGT6Q6P531 493 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 RIPK4P57078 832 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 AMOTL1Q8IY63 956 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 SERPINA10Q9UK55 444 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 SEPT11Q9NVA2 429 aaKnown RBP10.34□□□□□ -0.75
USF3-201ENST00000316407 KIF7Q2M1P5 1343 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 IQCEQ6IPM2 695 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 NEUROD6Q96NK8 337 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 EZRP15311 586 aaKnown RBP10.34□□□□□ -0.75
USF3-201ENST00000316407 CLGNO14967 610 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 GBP2P32456 591 aaPredicted RBP10.34□□□□□ -0.75
USF3-201ENST00000316407 KIAA1328Q86T90 577 aa10.34□□□□□ -0.75
USF3-201ENST00000316407 SLC26A8Q96RN1 970 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 ERC2O15083 957 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 CDCA7LQ96GN5 454 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 CEP63Q96MT8 703 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 K7ELQ4 463 aaPredicted RBP10.33□□□□□ -0.76
USF3-201ENST00000316407 G3BP1Q13283 466 aaKnown RBP eCLIP10.33□□□□□ -0.76
USF3-201ENST00000316407 CDK5RAP3Q96JB5 506 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 SKAP1Q86WV1 359 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 CASQ1P31415 396 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 SYCP1Q15431 976 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 MCM4P33991 863 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 RABEP1Q15276 862 aa10.33□□□□□ -0.76
USF3-201ENST00000316407 MAP2K1Q02750 393 aaPredicted RBP10.33□□□□□ -0.76
USF3-201ENST00000316407 WASHC4Q2M389 1173 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 GOPCQ9HD26 462 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 TRAK1Q9UPV9 953 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 NGDNQ8NEJ9 315 aaKnown RBP10.32□□□□□ -0.76
USF3-201ENST00000316407 PDCP20941 246 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 BCCIPQ9P287 314 aaKnown RBP eCLIP10.32□□□□□ -0.76
USF3-201ENST00000316407 TRMT1Q9NXH9 659 aaKnown RBP10.32□□□□□ -0.76
USF3-201ENST00000316407 UBE4AQ14139 1066 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 HMOX1P09601 288 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 PDZRN3Q9UPQ7 1066 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 ARHGAP29Q52LW3 1261 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 DNAAF4Q8WXU2 420 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 RAI14Q9P0K7 980 aa10.32□□□□□ -0.76
USF3-201ENST00000316407 FSD1Q9BTV5 496 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 CTDP1Q9Y5B0 961 aaPredicted RBP10.31□□□□□ -0.76
USF3-201ENST00000316407 PTPN14Q15678 1187 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 KRI1Q8N9T8 703 aaKnown RBP10.31□□□□□ -0.76
USF3-201ENST00000316407 ZNF396Q96N95 335 aaPredicted RBP10.31□□□□□ -0.76
USF3-201ENST00000316407 TANGO6Q9C0B7 1094 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 IGSF3O75054 1194 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 CLIP2Q9UDT6 1046 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 KRT18P05783 430 aaKnown RBP10.31□□□□□ -0.76
USF3-201ENST00000316407 CNTROBQ8N137 903 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 CCDC88BA6NC98 1476 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 CNTLNQ9NXG0 1405 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 SPATA32Q96LK8 384 aa10.31□□□□□ -0.76
USF3-201ENST00000316407 CCDC144AA2RUR9 1427 aa10.3□□□□□ -0.76
USF3-201ENST00000316407 ATP2C2O75185 946 aa10.3□□□□□ -0.76
USF3-201ENST00000316407 LIG1P18858 919 aa10.3□□□□□ -0.76
USF3-201ENST00000316407 PUS7Q96PZ0 661 aaKnown RBP10.3□□□□□ -0.76
USF3-201ENST00000316407 KIF18AQ8NI77 898 aa10.3□□□□□ -0.76
USF3-201ENST00000316407 NUP62CLQ9H1M0 184 aa10.3□□□□□ -0.76
USF3-201ENST00000316407 UPF3BQ9BZI7 483 aaKnown RBP10.29□□□□□ -0.76
USF3-201ENST00000316407 CTR9Q6PD62 1173 aa10.29□□□□□ -0.76
USF3-201ENST00000316407 EPB41L2O43491 1005 aaKnown RBP10.29□□□□□ -0.76
USF3-201ENST00000316407 C1orf141Q5JVX7 400 aa10.29□□□□□ -0.76
USF3-201ENST00000316407 CUX2O14529 1486 aa10.29□□□□□ -0.76
USF3-201ENST00000316407 CFAP100Q494V2 611 aa10.29□□□□□ -0.76
USF3-201ENST00000316407 ANKRD18AQ8IVF6 992 aa10.29□□□□□ -0.76
USF3-201ENST00000316407 KRT85P78386 507 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms