RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DESP17661 470 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 C11orf95C9JLR9 678 aaPredicted RBP4.83□□□□□ -1.64
USH2A-201ENST00000307340 TRIM29Q14134 588 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 COG3Q96JB2 828 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 SLKQ9H2G2 1235 aaPredicted RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 KIAA1210Q9ULL0 1709 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 ABCC2Q92887 1545 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 ZSCAN25Q6NSZ9 544 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 SLC3A2P08195 630 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 BECN2A8MW95 431 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 SAFBQ15424 915 aaKnown RBP eCLIP4.82□□□□□ -1.64
USH2A-201ENST00000307340 ADCY10Q96PN6 1610 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 CCDC196A0A1B0GTZ2 297 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 CCDC39Q9UFE4 941 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 TCOF1Q13428 1488 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 ERICH2A1L162 156 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 CCT4P50991 539 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 ATL3Q6DD88 541 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 RRP1P56182 461 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 NOC3LQ8WTT2 800 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 SMARCE1Q969G3 411 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 PPIP5K1Q6PFW1 1433 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 RRP9O43818 475 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 LRRCC1Q9C099 1032 aa4.82□□□□□ -1.64
USH2A-201ENST00000307340 ZC3H13Q5T200 1668 aaKnown RBP4.82□□□□□ -1.64
USH2A-201ENST00000307340 TXLNAP40222 546 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 NAP1L5Q96NT1 182 aaPredicted RBP4.81□□□□□ -1.64
USH2A-201ENST00000307340 GRIN2AQ12879 1464 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 C14orf37Q86TY3 774 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 LRPPRCP42704 1394 aaKnown RBP4.81□□□□□ -1.64
USH2A-201ENST00000307340 CLUL1Q15846 466 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 AKAP17AQ02040 695 aaKnown RBP4.81□□□□□ -1.64
USH2A-201ENST00000307340 KIF20AO95235 890 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 ZFYVE9O95405 1425 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 PLB1Q6P1J6 1458 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 NF2P35240 595 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 SETD1BQ9UPS6 1966 aaKnown RBP4.81□□□□□ -1.64
USH2A-201ENST00000307340 ARAP1Q96P48 1450 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 ABCC1P33527 1531 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 ASXL1Q8IXJ9 1541 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 BABAM1Q9NWV8 329 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 NCOA1Q15788 1441 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 EIF3JO75822 258 aaKnown RBP4.81□□□□□ -1.64
USH2A-201ENST00000307340 PTPRCP08575 1304 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 SMC2O95347 1197 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 MNS1Q8NEH6 495 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 ARXQ96QS3 562 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 INCENPQ9NQS7 918 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 KIF3BO15066 747 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 GTF2F1P35269 517 aaKnown RBP eCLIP4.81□□□□□ -1.64
USH2A-201ENST00000307340 CCDC171Q6TFL3 1326 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 NDC80O14777 642 aa4.81□□□□□ -1.64
USH2A-201ENST00000307340 TRAPPC8Q9Y2L5 1435 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 NPHP1O15259 732 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 ADGRL2O95490 1459 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 MAP9Q49MG5 647 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 GBP3Q9H0R5 595 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 URB2Q14146 1524 aaKnown RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 KIAA0556O60303 1618 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 MYO1BO43795 1136 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 ADGRL1O94910 1474 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 TCEAL9Q9UHQ7 104 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 NBR1Q14596 966 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 DNAAF4Q8WXU2 420 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 WASF1Q92558 559 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 IQCDQ96DY2 449 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 NEURL4Q96JN8 1562 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 U2AF1L5P0DN76 240 aaPredicted RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 U2AF1Q01081 240 aaKnown RBP eCLIP4.8□□□□□ -1.64
USH2A-201ENST00000307340 CCDC30Q5VVM6 783 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 MAST1Q9Y2H9 1570 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 HSPA5P11021 654 aaKnown RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 L3MBTL2Q969R5 705 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 SCAF11Q99590 1463 aaKnown RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 CASTP20810 708 aaKnown RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 CCDC27Q2M243 656 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.8□□□□□ -1.64
USH2A-201ENST00000307340 PHAXQ9H814 394 aaKnown RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 RAB11FIP3O75154 756 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 ERLIN2O94905 339 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 ASXL2Q76L83 1435 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 ADAMTS12P58397 1594 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 DZIP1LQ8IYY4 767 aaKnown RBP4.8□□□□□ -1.64
USH2A-201ENST00000307340 CNTROBQ8N137 903 aa4.8□□□□□ -1.64
USH2A-201ENST00000307340 POTEB2H3BUK9 544 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 TTC21BQ7Z4L5 1316 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 SBNO1A3KN83 1393 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 PPP1R2P41236 205 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 RBM25P49756 843 aaKnown RBP4.79□□□□□ -1.64
USH2A-201ENST00000307340 SBNO2Q9Y2G9 1366 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 ARHGAP31Q2M1Z3 1444 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 OSCARQ8IYS5 282 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 ZNF396Q96N95 335 aaPredicted RBP4.79□□□□□ -1.64
USH2A-201ENST00000307340 BMP15O95972 392 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 FAM43AQ8N2R8 423 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 H3BQV1 296 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 IFFO2Q5TF58 517 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 EHBP1Q8NDI1 1231 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 WDR62O43379 1518 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 FCHSD2O94868 740 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms