RNA–Protein interactions for RNA: ENST00000305866.9

VPS50-202, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS50, Length 3,613 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-202ENST00000305866 A2ML1A8K2U0 1454 aa7.09□□□□□ -1.27
VPS50-202ENST00000305866 CT47B1P0C2W7 299 aaPredicted RBP7.09□□□□□ -1.27
VPS50-202ENST00000305866 DIP2AQ14689 1571 aa7.09□□□□□ -1.27
VPS50-202ENST00000305866 CPSF1Q10570 1443 aaKnown RBP7.08□□□□□ -1.28
VPS50-202ENST00000305866 FAM135BQ49AJ0 1406 aa7.08□□□□□ -1.28
VPS50-202ENST00000305866 BRPF1P55201 1214 aaPredicted RBP7.08□□□□□ -1.28
VPS50-202ENST00000305866 TBC1D2Q9BYX2 928 aa7.08□□□□□ -1.28
VPS50-202ENST00000305866 CENPJQ9HC77 1338 aaPredicted RBP7.08□□□□□ -1.28
VPS50-202ENST00000305866 WDR63Q8IWG1 891 aa7.08□□□□□ -1.28
VPS50-202ENST00000305866 SLC52A1Q9NWF4 448 aa7.08□□□□□ -1.28
VPS50-202ENST00000305866 RGS12O14924 1447 aa7.08□□□□□ -1.28
VPS50-202ENST00000305866 NSD3Q9BZ95 1437 aa7.07□□□□□ -1.28
VPS50-202ENST00000305866 IL16Q14005 1332 aa7.07□□□□□ -1.28
VPS50-202ENST00000305866 E9PSI1 815 aa7.07□□□□□ -1.28
VPS50-202ENST00000305866 KNSTRNQ9Y448 316 aa7.07□□□□□ -1.28
VPS50-202ENST00000305866 XRCC6P12956 609 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS50-202ENST00000305866 CLEC17AQ6ZS10 378 aa7.07□□□□□ -1.28
VPS50-202ENST00000305866 NPM2Q86SE8 214 aaKnown RBP7.07□□□□□ -1.28
VPS50-202ENST00000305866 CLUAP1Q96AJ1 413 aa7.07□□□□□ -1.28
VPS50-202ENST00000305866 RTN4Q9NQC3 1192 aaKnown RBP7.07□□□□□ -1.28
VPS50-202ENST00000305866 APAF1O14727 1248 aa7.06□□□□□ -1.28
VPS50-202ENST00000305866 KIF3BO15066 747 aa7.06□□□□□ -1.28
VPS50-202ENST00000305866 PTCH1Q13635 1447 aa7.06□□□□□ -1.28
VPS50-202ENST00000305866 CFAP70Q5T0N1 1121 aa7.06□□□□□ -1.28
VPS50-202ENST00000305866 PHRF1Q9P1Y6 1649 aaKnown RBP7.06□□□□□ -1.28
VPS50-202ENST00000305866 TRIM35Q9UPQ4 493 aa7.06□□□□□ -1.28
VPS50-202ENST00000305866 ATAD2Q6PL18 1390 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 CGNL1Q0VF96 1302 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 RGL3Q3MIN7 710 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 AATKQ6ZMQ8 1374 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 CDK12Q9NYV4 1490 aaPredicted RBP7.05□□□□□ -1.28
VPS50-202ENST00000305866 CCDC146Q8IYE0 955 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 PANK1Q8TE04 598 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 OSCARQ8IYS5 282 aa7.05□□□□□ -1.28
VPS50-202ENST00000305866 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.04□□□□□ -1.28
VPS50-202ENST00000305866 SLIT1O75093 1534 aa7.04□□□□□ -1.28
VPS50-202ENST00000305866 RBM25P49756 843 aaKnown RBP7.04□□□□□ -1.28
VPS50-202ENST00000305866 HDAC1Q13547 482 aaPredicted RBP7.04□□□□□ -1.28
VPS50-202ENST00000305866 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS50-202ENST00000305866 SMC5Q8IY18 1101 aa7.03□□□□□ -1.28
VPS50-202ENST00000305866 MAPK8IP3Q9UPT6 1336 aa7.03□□□□□ -1.28
VPS50-202ENST00000305866 LMTK3Q96Q04 1460 aa7.03□□□□□ -1.28
VPS50-202ENST00000305866 ARHGAP23Q9P227 1491 aa7.03□□□□□ -1.28
VPS50-202ENST00000305866 VGFO15240 615 aaPredicted RBP7.03□□□□□ -1.28
VPS50-202ENST00000305866 PANK2Q9BZ23 570 aa7.03□□□□□ -1.28
VPS50-202ENST00000305866 MYH15Q9Y2K3 1946 aa7.03□□□□□ -1.28
VPS50-202ENST00000305866 CHD2O14647 1828 aaKnown RBP7.03□□□□□ -1.28
VPS50-202ENST00000305866 GAS2L3Q86XJ1 694 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 RUNDC1Q96C34 613 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 A0A1W2PP64 1363 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 SSH2Q76I76 1423 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 CD2BP2O95400 341 aaKnown RBP7.02□□□□□ -1.29
VPS50-202ENST00000305866 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.02□□□□□ -1.29
VPS50-202ENST00000305866 PDZRN3Q9UPQ7 1066 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 DDX60Q8IY21 1712 aaKnown RBP7.02□□□□□ -1.29
VPS50-202ENST00000305866 CACNA1FO60840 1977 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 CLCN1P35523 988 aa7.02□□□□□ -1.29
VPS50-202ENST00000305866 CNGB1Q14028 1251 aaPredicted RBP7.02□□□□□ -1.29
VPS50-202ENST00000305866 RTL5Q5HYW3 569 aaPredicted RBP7.02□□□□□ -1.29
VPS50-202ENST00000305866 ATP10DQ9P241 1426 aa7.01□□□□□ -1.29
VPS50-202ENST00000305866 TCHHQ07283 1943 aa7.01□□□□□ -1.29
VPS50-202ENST00000305866 CYP2E1P05181 493 aaPredicted RBP7.01□□□□□ -1.29
VPS50-202ENST00000305866 EVC2Q86UK5 1308 aa7.01□□□□□ -1.29
VPS50-202ENST00000305866 KIF24Q5T7B8 1368 aa7.01□□□□□ -1.29
VPS50-202ENST00000305866 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.01□□□□□ -1.29
VPS50-202ENST00000305866 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.01□□□□□ -1.29
VPS50-202ENST00000305866 SNX21Q969T3 373 aa7.01□□□□□ -1.29
VPS50-202ENST00000305866 ZBTB40Q9NUA8 1239 aa7.01□□□□□ -1.29
VPS50-202ENST00000305866 IBTKQ9P2D0 1353 aaPredicted RBP7.01□□□□□ -1.29
VPS50-202ENST00000305866 POLR3GLQ9BT43 218 aa7□□□□□ -1.29
VPS50-202ENST00000305866 MVPQ14764 893 aaKnown RBP7□□□□□ -1.29
VPS50-202ENST00000305866 SIRT2Q8IXJ6 389 aa7□□□□□ -1.29
VPS50-202ENST00000305866 COG6Q9Y2V7 657 aa7□□□□□ -1.29
VPS50-202ENST00000305866 EDC4Q6P2E9 1401 aaKnown RBP7□□□□□ -1.29
VPS50-202ENST00000305866 SIPA1L3O60292 1781 aaPredicted RBP7□□□□□ -1.29
VPS50-202ENST00000305866 ZNF142P52746 1687 aaPredicted RBP7□□□□□ -1.29
VPS50-202ENST00000305866 CAMTA1Q9Y6Y1 1673 aa7□□□□□ -1.29
VPS50-202ENST00000305866 MCM4P33991 863 aa6.99□□□□□ -1.29
VPS50-202ENST00000305866 WDR43Q15061 677 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS50-202ENST00000305866 ZNF428Q96B54 188 aa6.99□□□□□ -1.29
VPS50-202ENST00000305866 IL17RAQ96F46 866 aa6.99□□□□□ -1.29
VPS50-202ENST00000305866 RSPH6AQ9H0K4 717 aa6.99□□□□□ -1.29
VPS50-202ENST00000305866 NWD1Q149M9 1564 aa6.98□□□□□ -1.29
VPS50-202ENST00000305866 KDM3BQ7LBC6 1761 aa6.98□□□□□ -1.29
VPS50-202ENST00000305866 TCP11L2Q8N4U5 519 aa6.98□□□□□ -1.29
VPS50-202ENST00000305866 TRIM27P14373 513 aa6.98□□□□□ -1.29
VPS50-202ENST00000305866 RGPD8O14715 1765 aaPredicted RBP6.98□□□□□ -1.29
VPS50-202ENST00000305866 ZNF853P0CG23 659 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 IDI1Q13907 227 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 ADAMTS7Q9UKP4 1686 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 NUCB1Q02818 461 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 RAB3GAP1Q15042 981 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 MED1Q15648 1581 aaPredicted RBP6.97□□□□□ -1.29
VPS50-202ENST00000305866 USP31Q70CQ4 1352 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 RGS3P49796 1198 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 PPP1R9BQ96SB3 815 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 OVOS2A0A0J9YW53 1432 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 OVOS2Q6IE36 1432 aa6.97□□□□□ -1.29
VPS50-202ENST00000305866 ADAMTS13Q76LX8 1427 aa6.96□□□□□ -1.29
VPS50-202ENST00000305866 RIMS2Q9UQ26 1411 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms