RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NEFHP12036 1026 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 GBP2P32456 591 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-201ENST00000303395 ALDH1L2Q3SY69 923 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 SASS6Q6UVJ0 657 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 DZIP1LQ8IYY4 767 aaKnown RBP6.27□□□□□ -1.41
SCN1A-201ENST00000303395 DACH1Q9UI36 760 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 FAM135AQ9P2D6 1515 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 USP25Q9UHP3 1055 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 LRPPRCP42704 1394 aaKnown RBP6.27□□□□□ -1.41
SCN1A-201ENST00000303395 ERC2O15083 957 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 VGFO15240 615 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-201ENST00000303395 CBFA2T2O43439 604 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 SNX21Q969T3 373 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 CGNQ9P2M7 1197 aaKnown RBP6.27□□□□□ -1.41
SCN1A-201ENST00000303395 IQGAP2Q13576 1575 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 PAXBP1Q9Y5B6 917 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC27Q2M243 656 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 PABPN1Q86U42 306 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCN1A-201ENST00000303395 DNAAF4Q8WXU2 420 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 C22orf23Q9BZE7 217 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 DHX16O60231 1041 aaKnown RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 AXDND1Q5T1B0 1012 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 ANKRD18AQ8IVF6 992 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 DCAF11Q8TEB1 546 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 PNISRQ8TF01 805 aaKnown RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 PYM1Q9BRP8 204 aaKnown RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 TACO1Q9BSH4 297 aaKnown RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 GSDMDP57764 484 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 KIF14Q15058 1648 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 ABCA5Q8WWZ7 1642 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 ANAPC15P60006 121 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 AMOTL1Q8IY63 956 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC47Q96A33 483 aaKnown RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 ERC1Q8IUD2 1116 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 ARHGAP45Q92619 1136 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 IVLP07476 585 aa6.26□□□□□ -1.41
SCN1A-201ENST00000303395 GABPB1Q06547 395 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 SMAP1Q8IYB5 467 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-201ENST00000303395 TMED8Q6PL24 325 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 MAGI1Q96QZ7 1491 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 ADGRL1O94910 1474 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 PPM1FP49593 454 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 KLHL40Q2TBA0 621 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 KANK4Q5T7N3 995 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 IQSEC3Q9UPP2 1182 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC192P0DO97 292 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 SIN3AQ96ST3 1273 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 ADGRL2O95490 1459 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 INCENPQ9NQS7 918 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 KIF24Q5T7B8 1368 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 GNAI3P08754 354 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 ATL3Q6DD88 541 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 HOMER1Q86YM7 354 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 FRAT2O75474 233 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 GTF2F1P35269 517 aaKnown RBP eCLIP6.25□□□□□ -1.41
SCN1A-201ENST00000303395 KRT32Q14532 448 aa6.25□□□□□ -1.41
SCN1A-201ENST00000303395 DHX37Q8IY37 1157 aaKnown RBP6.24□□□□□ -1.41
SCN1A-201ENST00000303395 SMC4Q9NTJ3 1288 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 ARID3CA6NKF2 412 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 BECN2A8MW95 431 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 TRAK2O60296 914 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC83Q8IWF9 413 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC112Q8NEF3 446 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 CHIC2Q9UKJ5 165 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 CTTNBP2Q8WZ74 1663 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 MCM4P33991 863 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 SYCP1Q15431 976 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 MAP9Q49MG5 647 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 GRIPAP1Q4V328 841 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 LEKR1Q6ZMV7 388 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 CCAR2Q8N163 923 aaKnown RBP6.24□□□□□ -1.41
SCN1A-201ENST00000303395 SH2B1Q9NRF2 756 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-201ENST00000303395 GRPEL1Q9HAV7 217 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 ZNHIT6Q9NWK9 470 aaKnown RBP6.24□□□□□ -1.41
SCN1A-201ENST00000303395 EZRP15311 586 aaKnown RBP6.24□□□□□ -1.41
SCN1A-201ENST00000303395 ASXL2Q76L83 1435 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 UGGT2Q9NYU1 1516 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 FILIP1Q7Z7B0 1213 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 RPAP2Q8IXW5 612 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-201ENST00000303395 MNS1Q8NEH6 495 aa6.24□□□□□ -1.41
SCN1A-201ENST00000303395 EPRSP07814 1512 aaKnown RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 SBNO2Q9Y2G9 1366 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 AKAP17AQ02040 695 aaKnown RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC73Q6ZRK6 1079 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 DNAJC2Q99543 621 aaKnown RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 GOLGA6L10A0A0M3HER8 536 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 HSP90AB2PQ58FF8 381 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 TSPY26PQ9H489 355 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 NUTM1Q86Y26 1132 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 RTF1Q92541 710 aaKnown RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 SCAND2PQ9GZW5 306 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 CCDC171Q6TFL3 1326 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 DDX12PQ92771 950 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 WDR7Q9Y4E6 1490 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 C9orf84Q5VXU9 1444 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 DYDC1Q8WWB3 177 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 DEF6Q9H4E7 631 aa6.23□□□□□ -1.41
SCN1A-201ENST00000303395 RBM28Q9NW13 759 aaKnown RBP6.23□□□□□ -1.41
SCN1A-201ENST00000303395 ZNF396Q96N95 335 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms