RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 SHPRHQ149N8 1683 aa20.88■□□□□ 0.93
HERPUD1-201ENST00000300302 SMG6Q86US8 1419 aaKnown RBP20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 PDE3BQ13370 1112 aa20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 C14orf37Q86TY3 774 aa20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 NGDNQ8NEJ9 315 aaKnown RBP20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 TTC21BQ7Z4L5 1316 aa20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 SENP3-EIF4A1A0A087X0R7 540 aa20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 PMFBP1Q8TBY8 1022 aa20.86■□□□□ 0.93
HERPUD1-201ENST00000300302 TTC21AQ8NDW8 1320 aa20.83■□□□□ 0.93
HERPUD1-201ENST00000300302 NUDCQ9Y266 331 aa20.83■□□□□ 0.92
HERPUD1-201ENST00000300302 SALL2Q9Y467 1007 aaPredicted RBP20.83■□□□□ 0.92
HERPUD1-201ENST00000300302 AATKQ6ZMQ8 1374 aa20.83■□□□□ 0.92
HERPUD1-201ENST00000300302 STRCP1A6NGW2 1772 aa20.82■□□□□ 0.92
HERPUD1-201ENST00000300302 ZNF335Q9H4Z2 1342 aaPredicted RBP20.82■□□□□ 0.92
HERPUD1-201ENST00000300302 SSH2Q76I76 1423 aa20.82■□□□□ 0.92
HERPUD1-201ENST00000300302 NEFLP07196 543 aa20.81■□□□□ 0.92
HERPUD1-201ENST00000300302 NGEFQ8N5V2 710 aa20.81■□□□□ 0.92
HERPUD1-201ENST00000300302 PNPLA6Q8IY17 1366 aa20.8■□□□□ 0.92
HERPUD1-201ENST00000300302 CCDC146Q8IYE0 955 aa20.8■□□□□ 0.92
HERPUD1-201ENST00000300302 COL3A1P02461 1466 aaPredicted RBP20.8■□□□□ 0.92
HERPUD1-201ENST00000300302 TMEM94Q12767 1356 aa20.8■□□□□ 0.92
HERPUD1-201ENST00000300302 POLKQ9UBT6 870 aa20.79■□□□□ 0.92
HERPUD1-201ENST00000300302 ZRANB1Q9UGI0 708 aa20.79■□□□□ 0.92
HERPUD1-201ENST00000300302 PHF8Q9UPP1 1060 aa20.79■□□□□ 0.92
HERPUD1-201ENST00000300302 DMRT2Q9Y5R5 561 aa20.79■□□□□ 0.92
HERPUD1-201ENST00000300302 MAP2P11137 1827 aaKnown RBP20.78■□□□□ 0.92
HERPUD1-201ENST00000300302 DIAPH1O60610 1272 aaKnown RBP20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 SUPT16HQ9Y5B9 1047 aaKnown RBP20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 OVOS2A0A0J9YW53 1432 aa20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 OVOS2Q6IE36 1432 aa20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 U2AF1L5P0DN76 240 aaPredicted RBP20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 U2AF1Q01081 240 aaKnown RBP eCLIP20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 RUNDC1Q96C34 613 aa20.77■□□□□ 0.92
HERPUD1-201ENST00000300302 NCOA3Q9Y6Q9 1424 aa20.77■□□□□ 0.91
HERPUD1-201ENST00000300302 APAF1O14727 1248 aa20.76■□□□□ 0.91
HERPUD1-201ENST00000300302 PPM1GO15355 546 aaPredicted RBP20.76■□□□□ 0.91
HERPUD1-201ENST00000300302 C19orf44Q9H6X5 657 aa20.76■□□□□ 0.91
HERPUD1-201ENST00000300302 CDK12Q9NYV4 1490 aaPredicted RBP20.75■□□□□ 0.91
HERPUD1-201ENST00000300302 U2SURPO15042 1029 aaKnown RBP20.74■□□□□ 0.91
HERPUD1-201ENST00000300302 ESCO1Q5FWF5 840 aa20.74■□□□□ 0.91
HERPUD1-201ENST00000300302 USP31Q70CQ4 1352 aa20.74■□□□□ 0.91
HERPUD1-201ENST00000300302 FBLN1P23142 703 aa20.73■□□□□ 0.91
HERPUD1-201ENST00000300302 PNNQ9H307 717 aaKnown RBP20.73■□□□□ 0.91
HERPUD1-201ENST00000300302 EMILIN1Q9Y6C2 1016 aa20.73■□□□□ 0.91
HERPUD1-201ENST00000300302 ZNF521Q96K83 1311 aa20.72■□□□□ 0.91
HERPUD1-201ENST00000300302 DCCP43146 1447 aa20.71■□□□□ 0.91
HERPUD1-201ENST00000300302 FKBP8Q14318 412 aa20.71■□□□□ 0.91
HERPUD1-201ENST00000300302 LRRC7Q96NW7 1537 aa20.71■□□□□ 0.91
HERPUD1-201ENST00000300302 PIK3C2AO00443 1686 aa20.7■□□□□ 0.91
HERPUD1-201ENST00000300302 RRS1Q15050 365 aaKnown RBP20.7■□□□□ 0.9
HERPUD1-201ENST00000300302 AEBP2Q6ZN18 517 aaPredicted RBP20.7■□□□□ 0.9
HERPUD1-201ENST00000300302 ATF3P18847 181 aa20.69■□□□□ 0.9
HERPUD1-201ENST00000300302 PSME1Q06323 249 aa20.69■□□□□ 0.9
HERPUD1-201ENST00000300302 GOLGA2Q08379 1002 aa20.69■□□□□ 0.9
HERPUD1-201ENST00000300302 CDCA7LQ96GN5 454 aa20.69■□□□□ 0.9
HERPUD1-201ENST00000300302 IQSEC2Q5JU85 1478 aa20.69■□□□□ 0.9
HERPUD1-201ENST00000300302 PAK3O75914 559 aaPredicted RBP20.68■□□□□ 0.9
HERPUD1-201ENST00000300302 NCBP3Q53F19 620 aaKnown RBP20.68■□□□□ 0.9
HERPUD1-201ENST00000300302 TCP11L2Q8N4U5 519 aa20.68■□□□□ 0.9
HERPUD1-201ENST00000300302 USP54Q70EL1 1684 aa20.67■□□□□ 0.9
HERPUD1-201ENST00000300302 NLRP6P59044 892 aa20.67■□□□□ 0.9
HERPUD1-201ENST00000300302 ABTB2Q8N961 1025 aa20.67■□□□□ 0.9
HERPUD1-201ENST00000300302 C1orf167Q5SNV9 1468 aa20.67■□□□□ 0.9
HERPUD1-201ENST00000300302 ORAI2Q96SN7 254 aa20.67■□□□□ 0.9
HERPUD1-201ENST00000300302 KIF1AQ12756 1690 aa20.66■□□□□ 0.9
HERPUD1-201ENST00000300302 FCHSD2O94868 740 aa20.66■□□□□ 0.9
HERPUD1-201ENST00000300302 MAPK8IP3Q9UPT6 1336 aa20.66■□□□□ 0.9
HERPUD1-201ENST00000300302 MSH6P52701 1360 aa20.66■□□□□ 0.9
HERPUD1-201ENST00000300302 IL13P35225 146 aa20.64■□□□□ 0.9
HERPUD1-201ENST00000300302 CADPS2Q86UW7 1296 aa20.64■□□□□ 0.9
HERPUD1-201ENST00000300302 PLEKHF1Q96S99 279 aa20.64■□□□□ 0.9
HERPUD1-201ENST00000300302 CCDC27Q2M243 656 aa20.64■□□□□ 0.89
HERPUD1-201ENST00000300302 NEFMP07197 916 aa20.63■□□□□ 0.89
HERPUD1-201ENST00000300302 WWC1Q8IX03 1113 aa20.63■□□□□ 0.89
HERPUD1-201ENST00000300302 MST1RQ04912 1400 aa20.63■□□□□ 0.89
HERPUD1-201ENST00000300302 XIRP1Q702N8 1843 aaKnown RBP20.62■□□□□ 0.89
HERPUD1-201ENST00000300302 SOX12O15370 315 aa20.62■□□□□ 0.89
HERPUD1-201ENST00000300302 NEUROD2Q15784 382 aa20.62■□□□□ 0.89
HERPUD1-201ENST00000300302 E9PSI1 815 aa20.61■□□□□ 0.89
HERPUD1-201ENST00000300302 FOXO3O43524 673 aa20.61■□□□□ 0.89
HERPUD1-201ENST00000300302 SLFN5Q08AF3 891 aa20.61■□□□□ 0.89
HERPUD1-201ENST00000300302 RCAN3Q9UKA8 241 aa20.61■□□□□ 0.89
HERPUD1-201ENST00000300302 RRP7AQ9Y3A4 280 aaKnown RBP20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 MARF1Q9Y4F3 1742 aaKnown RBP20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 SBNO1A3KN83 1393 aa20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 MAP3K19Q56UN5 1328 aa20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 RNF123Q5XPI4 1314 aa20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 DUSP27Q5VZP5 1158 aa20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 NUTM2GQ5VZR2 741 aa20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 PHF23Q9BUL5 403 aaPredicted RBP20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 RSPH6AQ9H0K4 717 aa20.6■□□□□ 0.89
HERPUD1-201ENST00000300302 FLT4P35916 1363 aa20.59■□□□□ 0.89
HERPUD1-201ENST00000300302 KIF24Q5T7B8 1368 aa20.59■□□□□ 0.89
HERPUD1-201ENST00000300302 ERICH6BQ5W0A0 696 aa20.59■□□□□ 0.89
HERPUD1-201ENST00000300302 WDR63Q8IWG1 891 aa20.59■□□□□ 0.89
HERPUD1-201ENST00000300302 PEAK1Q9H792 1746 aa20.59■□□□□ 0.89
HERPUD1-201ENST00000300302 PRKAR2BP31323 418 aa20.58■□□□□ 0.88
HERPUD1-201ENST00000300302 TMPOP42166 694 aaKnown RBP20.58■□□□□ 0.88
HERPUD1-201ENST00000300302 AMPHP49418 695 aa20.58■□□□□ 0.88
HERPUD1-201ENST00000300302 TRMT2AQ8IZ69 625 aaKnown RBP20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms