RNA–Protein interactions for RNA: ENST00000297423.8

SPIDR-201, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPIDR, Length 3,988 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-201ENST00000297423 USP19O94966 1318 aa18.58■□□□□ 0.57
SPIDR-201ENST00000297423 FOXD4L6Q3SYB3 417 aaPredicted RBP18.58■□□□□ 0.57
SPIDR-201ENST00000297423 FOXD4L3Q6VB84 417 aaPredicted RBP18.58■□□□□ 0.57
SPIDR-201ENST00000297423 ZMYM3Q14202 1370 aa18.58■□□□□ 0.56
SPIDR-201ENST00000297423 AGLP35573 1532 aa18.57■□□□□ 0.56
SPIDR-201ENST00000297423 ERBB4Q15303 1308 aa18.57■□□□□ 0.56
SPIDR-201ENST00000297423 ZC3H13Q5T200 1668 aaKnown RBP18.57■□□□□ 0.56
SPIDR-201ENST00000297423 U2SURPO15042 1029 aaKnown RBP18.57■□□□□ 0.56
SPIDR-201ENST00000297423 SMC4Q9NTJ3 1288 aa18.57■□□□□ 0.56
SPIDR-201ENST00000297423 PARD3Q8TEW0 1356 aa18.56■□□□□ 0.56
SPIDR-201ENST00000297423 ZHX1Q9UKY1 873 aaPredicted RBP18.56■□□□□ 0.56
SPIDR-201ENST00000297423 KIF13AQ9H1H9 1805 aa18.56■□□□□ 0.56
SPIDR-201ENST00000297423 APBB1O00213 710 aa18.56■□□□□ 0.56
SPIDR-201ENST00000297423 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.56■□□□□ 0.56
SPIDR-201ENST00000297423 SRPK2P78362 688 aaKnown RBP18.55■□□□□ 0.56
SPIDR-201ENST00000297423 LAMC1P11047 1609 aa18.55■□□□□ 0.56
SPIDR-201ENST00000297423 XPCQ01831 940 aaPredicted RBP18.55■□□□□ 0.56
SPIDR-201ENST00000297423 NEURL4Q96JN8 1562 aa18.55■□□□□ 0.56
SPIDR-201ENST00000297423 ERVK-7P63135 1459 aa18.55■□□□□ 0.56
SPIDR-201ENST00000297423 EVC2Q86UK5 1308 aa18.54■□□□□ 0.56
SPIDR-201ENST00000297423 TNPO1Q92973 898 aaKnown RBP18.54■□□□□ 0.56
SPIDR-201ENST00000297423 POLR1AO95602 1720 aaPredicted RBP18.54■□□□□ 0.56
SPIDR-201ENST00000297423 TPM2P07951 284 aa18.54■□□□□ 0.56
SPIDR-201ENST00000297423 MORC1Q86VD1 984 aa18.54■□□□□ 0.56
SPIDR-201ENST00000297423 RNF214Q8ND24 703 aa18.54■□□□□ 0.56
SPIDR-201ENST00000297423 ARHGEF40Q8TER5 1519 aa18.53■□□□□ 0.56
SPIDR-201ENST00000297423 RLBP1P12271 317 aa18.53■□□□□ 0.56
SPIDR-201ENST00000297423 CALD1Q05682 793 aaKnown RBP18.53■□□□□ 0.56
SPIDR-201ENST00000297423 U2AF1L5P0DN76 240 aaPredicted RBP18.53■□□□□ 0.56
SPIDR-201ENST00000297423 U2AF1Q01081 240 aaKnown RBP eCLIP18.53■□□□□ 0.56
SPIDR-201ENST00000297423 MCTP1Q6DN14 999 aa18.53■□□□□ 0.56
SPIDR-201ENST00000297423 GAS2L3Q86XJ1 694 aa18.53■□□□□ 0.56
SPIDR-201ENST00000297423 CAVIN1Q6NZI2 390 aaKnown RBP18.52■□□□□ 0.56
SPIDR-201ENST00000297423 PIK3C2GO75747 1445 aa18.52■□□□□ 0.56
SPIDR-201ENST00000297423 CEBPAP49715 358 aaPredicted RBP18.52■□□□□ 0.56
SPIDR-201ENST00000297423 ANTXR1Q9H6X2 564 aa18.52■□□□□ 0.55
SPIDR-201ENST00000297423 PDE3AQ14432 1141 aa18.51■□□□□ 0.55
SPIDR-201ENST00000297423 PDCL3Q9H2J4 239 aa18.51■□□□□ 0.55
SPIDR-201ENST00000297423 TNRQ92752 1358 aa18.51■□□□□ 0.55
SPIDR-201ENST00000297423 MROH2AA6NES4 1674 aa18.51■□□□□ 0.55
SPIDR-201ENST00000297423 SYNMO15061 1565 aa18.51■□□□□ 0.55
SPIDR-201ENST00000297423 MINK1Q8N4C8 1332 aaPredicted RBP18.5■□□□□ 0.55
SPIDR-201ENST00000297423 REREQ9P2R6 1566 aa18.5■□□□□ 0.55
SPIDR-201ENST00000297423 NOL8Q76FK4 1167 aaKnown RBP18.49■□□□□ 0.55
SPIDR-201ENST00000297423 TSR2Q969E8 191 aaKnown RBP18.49■□□□□ 0.55
SPIDR-201ENST00000297423 EID1Q9Y6B2 187 aa18.49■□□□□ 0.55
SPIDR-201ENST00000297423 ANKRD45Q5TZF3 282 aa18.48■□□□□ 0.55
SPIDR-201ENST00000297423 PRAM1Q96QH2 718 aa18.48■□□□□ 0.55
SPIDR-201ENST00000297423 CLTCQ00610 1675 aaKnown RBP18.48■□□□□ 0.55
SPIDR-201ENST00000297423 UQCRHLA0A096LP55 91 aa18.48■□□□□ 0.55
SPIDR-201ENST00000297423 UQCRHP07919 91 aa18.48■□□□□ 0.55
SPIDR-201ENST00000297423 BCL11BQ9C0K0 894 aaPredicted RBP18.48■□□□□ 0.55
SPIDR-201ENST00000297423 TCP11L2Q8N4U5 519 aa18.48■□□□□ 0.55
SPIDR-201ENST00000297423 SSFA2P28290 1259 aa18.47■□□□□ 0.55
SPIDR-201ENST00000297423 RIMS2Q9UQ26 1411 aa18.47■□□□□ 0.55
SPIDR-201ENST00000297423 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.47■□□□□ 0.55
SPIDR-201ENST00000297423 WWC1Q8IX03 1113 aa18.47■□□□□ 0.55
SPIDR-201ENST00000297423 FSD2A1L4K1 749 aa18.47■□□□□ 0.55
SPIDR-201ENST00000297423 DZIP1LQ8IYY4 767 aaKnown RBP18.47■□□□□ 0.55
SPIDR-201ENST00000297423 PREX1Q8TCU6 1659 aa18.46■□□□□ 0.55
SPIDR-201ENST00000297423 RBM42Q9BTD8 480 aaKnown RBP18.46■□□□□ 0.55
SPIDR-201ENST00000297423 CABP2Q9NPB3 220 aa18.46■□□□□ 0.55
SPIDR-201ENST00000297423 ZKSCAN2Q63HK3 967 aa18.46■□□□□ 0.55
SPIDR-201ENST00000297423 ZSCAN30Q86W11 494 aa18.46■□□□□ 0.55
SPIDR-201ENST00000297423 SLC12A5Q9H2X9 1139 aa18.46■□□□□ 0.55
SPIDR-201ENST00000297423 NRXN1Q9ULB1 1477 aa18.45■□□□□ 0.54
SPIDR-201ENST00000297423 SIGLEC1Q9BZZ2 1709 aa18.45■□□□□ 0.54
SPIDR-201ENST00000297423 ELL2O00472 640 aaPredicted RBP18.45■□□□□ 0.54
SPIDR-201ENST00000297423 KIAA1210Q9ULL0 1709 aa18.45■□□□□ 0.54
SPIDR-201ENST00000297423 RARSP54136 660 aaKnown RBP18.44■□□□□ 0.54
SPIDR-201ENST00000297423 C1orf115Q9H7X2 142 aa18.44■□□□□ 0.54
SPIDR-201ENST00000297423 SKOR2Q2VWA4 1001 aaPredicted RBP18.43■□□□□ 0.54
SPIDR-201ENST00000297423 ZFYVE9O95405 1425 aa18.43■□□□□ 0.54
SPIDR-201ENST00000297423 CCDC173Q0VFZ6 552 aa18.43■□□□□ 0.54
SPIDR-201ENST00000297423 IQGAP1P46940 1657 aa18.43■□□□□ 0.54
SPIDR-201ENST00000297423 TXNDC2Q86VQ3 553 aa18.42■□□□□ 0.54
SPIDR-201ENST00000297423 NKTRP30414 1462 aaKnown RBP18.42■□□□□ 0.54
SPIDR-201ENST00000297423 DNAJC5Q9H3Z4 198 aa18.42■□□□□ 0.54
SPIDR-201ENST00000297423 NEXMIFQ5QGS0 1516 aa18.42■□□□□ 0.54
SPIDR-201ENST00000297423 PIK3C2BO00750 1634 aa18.41■□□□□ 0.54
SPIDR-201ENST00000297423 PPLO60437 1756 aa18.41■□□□□ 0.54
SPIDR-201ENST00000297423 CFAP53Q96M91 514 aa18.41■□□□□ 0.54
SPIDR-201ENST00000297423 SBNO2Q9Y2G9 1366 aa18.41■□□□□ 0.54
SPIDR-201ENST00000297423 PRPF40AO75400 957 aaKnown RBP18.4■□□□□ 0.54
SPIDR-201ENST00000297423 SETBP1Q9Y6X0 1596 aa18.4■□□□□ 0.54
SPIDR-201ENST00000297423 TERF2IPQ9NYB0 399 aa18.39■□□□□ 0.53
SPIDR-201ENST00000297423 A2ML1A8K2U0 1454 aa18.39■□□□□ 0.53
SPIDR-201ENST00000297423 FAM177BA6PVY3 158 aa18.38■□□□□ 0.53
SPIDR-201ENST00000297423 RBM27Q9P2N5 1060 aaKnown RBP18.38■□□□□ 0.53
SPIDR-201ENST00000297423 YTHDC2Q9H6S0 1430 aaKnown RBP18.38■□□□□ 0.53
SPIDR-201ENST00000297423 HDGFL2Q7Z4V5 671 aaPredicted RBP18.38■□□□□ 0.53
SPIDR-201ENST00000297423 THEMISQ8N1K5 641 aaPredicted RBP18.38■□□□□ 0.53
SPIDR-201ENST00000297423 EXOSC9Q06265 439 aaKnown RBP18.37■□□□□ 0.53
SPIDR-201ENST00000297423 WAPLQ7Z5K2 1190 aa18.37■□□□□ 0.53
SPIDR-201ENST00000297423 IFT172Q9UG01 1749 aa18.37■□□□□ 0.53
SPIDR-201ENST00000297423 MVPQ14764 893 aaKnown RBP18.37■□□□□ 0.53
SPIDR-201ENST00000297423 TSC1Q92574 1164 aa18.36■□□□□ 0.53
SPIDR-201ENST00000297423 TMEM131LA2VDJ0 1609 aa18.36■□□□□ 0.53
SPIDR-201ENST00000297423 KDM5AP29375 1690 aaKnown RBP18.36■□□□□ 0.53
SPIDR-201ENST00000297423 CDK19Q9BWU1 502 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms