RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 UQCRHP07919 91 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 RIPK4P57078 832 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 KLHL40Q2TBA0 621 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 ZBTB40Q9NUA8 1239 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 DUOX2Q9NRD8 1548 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 SAFB2Q14151 953 aaKnown RBP eCLIP12.72□□□□□ -0.37
LMX1A-201ENST00000294816 TMEM132EQ6IEE7 984 aa12.72□□□□□ -0.37
LMX1A-201ENST00000294816 AFAP1Q8N556 730 aa12.72□□□□□ -0.37
LMX1A-201ENST00000294816 SPAG9O60271 1321 aaKnown RBP12.72□□□□□ -0.37
LMX1A-201ENST00000294816 KIF2CQ99661 725 aa12.72□□□□□ -0.37
LMX1A-201ENST00000294816 KIF3BO15066 747 aa12.72□□□□□ -0.37
LMX1A-201ENST00000294816 STAC3Q96MF2 364 aa12.72□□□□□ -0.37
LMX1A-201ENST00000294816 PREX2Q70Z35 1606 aa12.71□□□□□ -0.37
LMX1A-201ENST00000294816 EFCAB2Q5VUJ9 269 aa12.71□□□□□ -0.37
LMX1A-201ENST00000294816 RBM27Q9P2N5 1060 aaKnown RBP12.71□□□□□ -0.37
LMX1A-201ENST00000294816 TMPOP42166 694 aaKnown RBP12.71□□□□□ -0.38
LMX1A-201ENST00000294816 BMP2KLQ5H9B9 411 aa12.71□□□□□ -0.38
LMX1A-201ENST00000294816 PRPF40AO75400 957 aaKnown RBP12.7□□□□□ -0.38
LMX1A-201ENST00000294816 ZSCAN23Q3MJ62 389 aa12.7□□□□□ -0.38
LMX1A-201ENST00000294816 RBSNQ9H1K0 784 aa12.7□□□□□ -0.38
LMX1A-201ENST00000294816 ELL2O00472 640 aaPredicted RBP12.7□□□□□ -0.38
LMX1A-201ENST00000294816 PTMAP06454 111 aaKnown RBP12.7□□□□□ -0.38
LMX1A-201ENST00000294816 RNF214Q8ND24 703 aa12.69□□□□□ -0.38
LMX1A-201ENST00000294816 PRDM10Q9NQV6 1147 aa12.69□□□□□ -0.38
LMX1A-201ENST00000294816 TTC37Q6PGP7 1564 aa12.69□□□□□ -0.38
LMX1A-201ENST00000294816 CEP152O94986 1710 aa12.69□□□□□ -0.38
LMX1A-201ENST00000294816 KIF16BQ96L93 1317 aa12.69□□□□□ -0.38
LMX1A-201ENST00000294816 IQSEC2Q5JU85 1478 aa12.69□□□□□ -0.38
LMX1A-201ENST00000294816 CT47B1P0C2W7 299 aaPredicted RBP12.69□□□□□ -0.38
LMX1A-201ENST00000294816 PRIM1P49642 420 aaKnown RBP12.69□□□□□ -0.38
LMX1A-201ENST00000294816 APBB1O00213 710 aa12.68□□□□□ -0.38
LMX1A-201ENST00000294816 PKP1Q13835 747 aa12.68□□□□□ -0.38
LMX1A-201ENST00000294816 DNTTIP2Q5QJE6 756 aaKnown RBP12.68□□□□□ -0.38
LMX1A-201ENST00000294816 NUTM2DQ5VT03 806 aaPredicted RBP12.68□□□□□ -0.38
LMX1A-201ENST00000294816 CHAMP1Q96JM3 812 aa12.68□□□□□ -0.38
LMX1A-201ENST00000294816 GGNBP2Q9H3C7 697 aa12.68□□□□□ -0.38
LMX1A-201ENST00000294816 KANK1Q14678 1352 aa12.68□□□□□ -0.38
LMX1A-201ENST00000294816 PTPRTO14522 1441 aa12.68□□□□□ -0.38
LMX1A-201ENST00000294816 MPNDQ8N594 471 aa12.67□□□□□ -0.38
LMX1A-201ENST00000294816 CDC45O75419 566 aa12.67□□□□□ -0.38
LMX1A-201ENST00000294816 TPRNQ4KMQ1 711 aa12.67□□□□□ -0.38
LMX1A-201ENST00000294816 TRIM35Q9UPQ4 493 aa12.67□□□□□ -0.38
LMX1A-201ENST00000294816 NUCB2P80303 420 aa12.66□□□□□ -0.38
LMX1A-201ENST00000294816 MAP7D2Q96T17 732 aa12.66□□□□□ -0.38
LMX1A-201ENST00000294816 TRAPPC8Q9Y2L5 1435 aa12.66□□□□□ -0.38
LMX1A-201ENST00000294816 ZNF518AQ6AHZ1 1483 aa12.66□□□□□ -0.38
LMX1A-201ENST00000294816 SYCE3A1L190 88 aa12.66□□□□□ -0.38
LMX1A-201ENST00000294816 CABP2Q9NPB3 220 aa12.66□□□□□ -0.38
LMX1A-201ENST00000294816 CLTCL1P53675 1640 aa12.65□□□□□ -0.38
LMX1A-201ENST00000294816 NOL7Q9UMY1 257 aaKnown RBP12.65□□□□□ -0.38
LMX1A-201ENST00000294816 AK9Q5TCS8 1911 aa12.65□□□□□ -0.38
LMX1A-201ENST00000294816 SPHKAPQ2M3C7 1700 aa12.65□□□□□ -0.38
LMX1A-201ENST00000294816 ZNF445P59923 1031 aa12.65□□□□□ -0.38
LMX1A-201ENST00000294816 LMBRD1Q9NUN5 540 aa12.65□□□□□ -0.38
LMX1A-201ENST00000294816 GCC1Q96CN9 775 aa12.64□□□□□ -0.39
LMX1A-201ENST00000294816 PODXL2Q9NZ53 605 aa12.64□□□□□ -0.39
LMX1A-201ENST00000294816 SHPRHQ149N8 1683 aa12.64□□□□□ -0.39
LMX1A-201ENST00000294816 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.64□□□□□ -0.39
LMX1A-201ENST00000294816 RABEP1Q15276 862 aa12.64□□□□□ -0.39
LMX1A-201ENST00000294816 FOXD4L6Q3SYB3 417 aaPredicted RBP12.64□□□□□ -0.39
LMX1A-201ENST00000294816 FOXD4L3Q6VB84 417 aaPredicted RBP12.64□□□□□ -0.39
LMX1A-201ENST00000294816 ZGPATQ8N5A5 531 aaKnown RBP12.64□□□□□ -0.39
LMX1A-201ENST00000294816 TRPM2O94759 1503 aa12.64□□□□□ -0.39
LMX1A-201ENST00000294816 UGGT1Q9NYU2 1555 aa12.64□□□□□ -0.39
LMX1A-201ENST00000294816 THUMPD2Q9BTF0 503 aaKnown RBP12.63□□□□□ -0.39
LMX1A-201ENST00000294816 ZKSCAN5Q9Y2L8 839 aa12.63□□□□□ -0.39
LMX1A-201ENST00000294816 ZHX1Q9UKY1 873 aaPredicted RBP12.63□□□□□ -0.39
LMX1A-201ENST00000294816 CSPP1Q1MSJ5 1256 aa12.63□□□□□ -0.39
LMX1A-201ENST00000294816 A0A0U1RQG5 324 aaPredicted RBP12.62□□□□□ -0.39
LMX1A-201ENST00000294816 NOL8Q76FK4 1167 aaKnown RBP12.62□□□□□ -0.39
LMX1A-201ENST00000294816 ABCC11Q96J66 1382 aa12.62□□□□□ -0.39
LMX1A-201ENST00000294816 SRPK2P78362 688 aaKnown RBP12.62□□□□□ -0.39
LMX1A-201ENST00000294816 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.62□□□□□ -0.39
LMX1A-201ENST00000294816 ZNF500O60304 480 aaPredicted RBP12.61□□□□□ -0.39
LMX1A-201ENST00000294816 TERF1P54274 439 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 GPT2Q8TD30 523 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 CCDC39Q9UFE4 941 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 NOS1P29475 1434 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 PPIP5K1Q6PFW1 1433 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 CD109Q6YHK3 1445 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 IBTKQ9P2D0 1353 aaPredicted RBP12.61□□□□□ -0.39
LMX1A-201ENST00000294816 HS1BP3Q53T59 392 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 STK26Q9P289 416 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 ZBTB7BO15156 539 aaPredicted RBP12.61□□□□□ -0.39
LMX1A-201ENST00000294816 ST18O60284 1047 aa12.61□□□□□ -0.39
LMX1A-201ENST00000294816 C16orf71Q8IYS4 520 aaPredicted RBP12.61□□□□□ -0.39
LMX1A-201ENST00000294816 GSPT1P15170 499 aaKnown RBP12.6□□□□□ -0.39
LMX1A-201ENST00000294816 PLEKHF1Q96S99 279 aa12.6□□□□□ -0.39
LMX1A-201ENST00000294816 TMEM63CQ9P1W3 806 aa12.6□□□□□ -0.39
LMX1A-201ENST00000294816 PRDM4Q9UKN5 801 aa12.6□□□□□ -0.39
LMX1A-201ENST00000294816 SASS6Q6UVJ0 657 aa12.6□□□□□ -0.39
LMX1A-201ENST00000294816 CHMP4BQ9H444 224 aaKnown RBP12.6□□□□□ -0.39
LMX1A-201ENST00000294816 EVC2Q86UK5 1308 aa12.6□□□□□ -0.39
LMX1A-201ENST00000294816 DYNC1I1O14576 645 aa12.6□□□□□ -0.39
LMX1A-201ENST00000294816 NSFL1CQ9UNZ2 370 aaKnown RBP12.6□□□□□ -0.39
LMX1A-201ENST00000294816 DIAPH1O60610 1272 aaKnown RBP12.59□□□□□ -0.39
LMX1A-201ENST00000294816 TSC1Q92574 1164 aa12.59□□□□□ -0.39
LMX1A-201ENST00000294816 JARID2Q92833 1246 aaPredicted RBP12.59□□□□□ -0.39
LMX1A-201ENST00000294816 ABCA6Q8N139 1617 aa12.59□□□□□ -0.39
LMX1A-201ENST00000294816 ALDH1L2Q3SY69 923 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms