RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 MORC1Q86VD1 984 aa22.37■■□□□ 1.17
CPSF4-201ENST00000292476 CDC42BPGQ6DT37 1551 aa22.37■■□□□ 1.17
CPSF4-201ENST00000292476 INSRP06213 1382 aa22.37■■□□□ 1.17
CPSF4-201ENST00000292476 BRINP3Q76B58 766 aa22.36■■□□□ 1.17
CPSF4-201ENST00000292476 PPIP5K1Q6PFW1 1433 aa22.36■■□□□ 1.17
CPSF4-201ENST00000292476 ZNF692Q9BU19 519 aaPredicted RBP22.36■■□□□ 1.17
CPSF4-201ENST00000292476 NUDCQ9Y266 331 aa22.35■■□□□ 1.17
CPSF4-201ENST00000292476 PHLPP1O60346 1717 aa22.35■■□□□ 1.17
CPSF4-201ENST00000292476 C1orf167Q5SNV9 1468 aa22.35■■□□□ 1.17
CPSF4-201ENST00000292476 CD163L1Q9NR16 1453 aa22.35■■□□□ 1.17
CPSF4-201ENST00000292476 NUTM2FA1L443 756 aa22.34■■□□□ 1.17
CPSF4-201ENST00000292476 RNF123Q5XPI4 1314 aa22.34■■□□□ 1.17
CPSF4-201ENST00000292476 CPSF1Q10570 1443 aaKnown RBP22.31■■□□□ 1.16
CPSF4-201ENST00000292476 ORAI2Q96SN7 254 aa22.3■■□□□ 1.16
CPSF4-201ENST00000292476 FMN2Q9NZ56 1722 aa22.3■■□□□ 1.16
CPSF4-201ENST00000292476 PLEKHG3A1L390 1219 aa22.3■■□□□ 1.16
CPSF4-201ENST00000292476 RBM19Q9Y4C8 960 aaKnown RBP22.3■■□□□ 1.16
CPSF4-201ENST00000292476 EDC4Q6P2E9 1401 aaKnown RBP22.29■■□□□ 1.16
CPSF4-201ENST00000292476 AHDC1Q5TGY3 1603 aaPredicted RBP22.29■■□□□ 1.16
CPSF4-201ENST00000292476 DDX17Q92841 729 aaKnown RBP22.29■■□□□ 1.16
CPSF4-201ENST00000292476 ANKARQ7Z5J8 1434 aa22.28■■□□□ 1.16
CPSF4-201ENST00000292476 COL16A1Q07092 1604 aaPredicted RBP22.28■■□□□ 1.16
CPSF4-201ENST00000292476 NHSL1Q5SYE7 1610 aa22.27■■□□□ 1.15
CPSF4-201ENST00000292476 IRX6P78412 446 aaPredicted RBP22.26■■□□□ 1.15
CPSF4-201ENST00000292476 WDR43Q15061 677 aaKnown RBP eCLIP22.26■■□□□ 1.15
CPSF4-201ENST00000292476 ESCO1Q5FWF5 840 aa22.26■■□□□ 1.15
CPSF4-201ENST00000292476 PRR36Q9H6K5 1346 aa22.26■■□□□ 1.15
CPSF4-201ENST00000292476 FYB1O15117 783 aa22.26■■□□□ 1.15
CPSF4-201ENST00000292476 POLR3AO14802 1390 aaPredicted RBP22.26■■□□□ 1.15
CPSF4-201ENST00000292476 RGPD8O14715 1765 aaPredicted RBP22.25■■□□□ 1.15
CPSF4-201ENST00000292476 CFAP53Q96M91 514 aa22.24■■□□□ 1.15
CPSF4-201ENST00000292476 ITSN1Q15811 1721 aa22.24■■□□□ 1.15
CPSF4-201ENST00000292476 TOPAZ1Q8N9V7 1692 aa22.24■■□□□ 1.15
CPSF4-201ENST00000292476 ANKRD26Q9UPS8 1709 aa22.22■■□□□ 1.15
CPSF4-201ENST00000292476 GGNBP2Q9H3C7 697 aa22.21■■□□□ 1.15
CPSF4-201ENST00000292476 AKAP12Q02952 1782 aa22.2■■□□□ 1.15
CPSF4-201ENST00000292476 KIF20BQ96Q89 1820 aa22.2■■□□□ 1.14
CPSF4-201ENST00000292476 MED1Q15648 1581 aaPredicted RBP22.2■■□□□ 1.14
CPSF4-201ENST00000292476 ACEP12821 1306 aa22.2■■□□□ 1.14
CPSF4-201ENST00000292476 MON2Q7Z3U7 1717 aa22.2■■□□□ 1.14
CPSF4-201ENST00000292476 PDE3BQ13370 1112 aa22.2■■□□□ 1.14
CPSF4-201ENST00000292476 JCADQ9P266 1359 aa22.18■■□□□ 1.14
CPSF4-201ENST00000292476 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.18■■□□□ 1.14
CPSF4-201ENST00000292476 FOXO3O43524 673 aa22.17■■□□□ 1.14
CPSF4-201ENST00000292476 TNNT2P45379 298 aaPredicted RBP22.17■■□□□ 1.14
CPSF4-201ENST00000292476 MTHFSP49914 203 aa22.17■■□□□ 1.14
CPSF4-201ENST00000292476 XPCQ01831 940 aaPredicted RBP22.17■■□□□ 1.14
CPSF4-201ENST00000292476 BLMP54132 1417 aaPredicted RBP22.16■■□□□ 1.14
CPSF4-201ENST00000292476 NGDNQ8NEJ9 315 aaKnown RBP22.16■■□□□ 1.14
CPSF4-201ENST00000292476 COG3Q96JB2 828 aa22.16■■□□□ 1.14
CPSF4-201ENST00000292476 TTC21AQ8NDW8 1320 aa22.16■■□□□ 1.14
CPSF4-201ENST00000292476 FANCIQ9NVI1 1328 aa22.16■■□□□ 1.14
CPSF4-201ENST00000292476 USP6P35125 1406 aa22.16■■□□□ 1.14
CPSF4-201ENST00000292476 KIF1AQ12756 1690 aa22.15■■□□□ 1.14
CPSF4-201ENST00000292476 ADAMTS8Q9UP79 889 aa22.14■■□□□ 1.14
CPSF4-201ENST00000292476 PHF8Q9UPP1 1060 aa22.14■■□□□ 1.14
CPSF4-201ENST00000292476 SOS2Q07890 1332 aaPredicted RBP22.14■■□□□ 1.14
CPSF4-201ENST00000292476 NPHP3Q7Z494 1330 aa22.14■■□□□ 1.14
CPSF4-201ENST00000292476 SHPRHQ149N8 1683 aa22.14■■□□□ 1.13
CPSF4-201ENST00000292476 LRRC59Q96AG4 307 aaKnown RBP22.14■■□□□ 1.13
CPSF4-201ENST00000292476 ANP32EQ9BTT0 268 aa22.14■■□□□ 1.13
CPSF4-201ENST00000292476 TTC21BQ7Z4L5 1316 aa22.13■■□□□ 1.13
CPSF4-201ENST00000292476 PMFBP1Q8TBY8 1022 aa22.13■■□□□ 1.13
CPSF4-201ENST00000292476 NGEFQ8N5V2 710 aa22.12■■□□□ 1.13
CPSF4-201ENST00000292476 PXDNQ92626 1479 aa22.11■■□□□ 1.13
CPSF4-201ENST00000292476 AATKQ6ZMQ8 1374 aa22.11■■□□□ 1.13
CPSF4-201ENST00000292476 NME9Q86XW9 330 aa22.1■■□□□ 1.13
CPSF4-201ENST00000292476 NRKQ7Z2Y5 1582 aa22.09■■□□□ 1.13
CPSF4-201ENST00000292476 SSH2Q76I76 1423 aa22.09■■□□□ 1.13
CPSF4-201ENST00000292476 PNPLA6Q8IY17 1366 aa22.09■■□□□ 1.13
CPSF4-201ENST00000292476 B4GALNT3Q6L9W6 998 aa22.08■■□□□ 1.13
CPSF4-201ENST00000292476 NUTM2BA6NNL0 878 aaPredicted RBP22.07■■□□□ 1.12
CPSF4-201ENST00000292476 NUTM2EB1AL46 878 aaPredicted RBP22.07■■□□□ 1.12
CPSF4-201ENST00000292476 NUTM2AQ8IVF1 878 aaPredicted RBP22.07■■□□□ 1.12
CPSF4-201ENST00000292476 SPATA31A6Q5VVP1 1343 aa22.07■■□□□ 1.12
CPSF4-201ENST00000292476 LRP6O75581 1613 aa22.07■■□□□ 1.12
CPSF4-201ENST00000292476 KRT28Q7Z3Y7 464 aa22.07■■□□□ 1.12
CPSF4-201ENST00000292476 PHF23Q9BUL5 403 aaPredicted RBP22.07■■□□□ 1.12
CPSF4-201ENST00000292476 PSME1Q06323 249 aa22.04■■□□□ 1.12
CPSF4-201ENST00000292476 PNNQ9H307 717 aaKnown RBP22.04■■□□□ 1.12
CPSF4-201ENST00000292476 USP31Q70CQ4 1352 aa22.03■■□□□ 1.12
CPSF4-201ENST00000292476 POLKQ9UBT6 870 aa22.03■■□□□ 1.12
CPSF4-201ENST00000292476 OVOS2A0A0J9YW53 1432 aa22.02■■□□□ 1.12
CPSF4-201ENST00000292476 OVOS2Q6IE36 1432 aa22.02■■□□□ 1.12
CPSF4-201ENST00000292476 DIAPH1O60610 1272 aaKnown RBP22.01■■□□□ 1.11
CPSF4-201ENST00000292476 RRP1P56182 461 aaKnown RBP22.01■■□□□ 1.11
CPSF4-201ENST00000292476 MEX3CQ5U5Q3 659 aaKnown RBP22.01■■□□□ 1.11
CPSF4-201ENST00000292476 SPATA31A3Q5VYP0 1347 aa22■■□□□ 1.11
CPSF4-201ENST00000292476 RUNDC1Q96C34 613 aa22■■□□□ 1.11
CPSF4-201ENST00000292476 CCDC136Q96JN2 1154 aa22■■□□□ 1.11
CPSF4-201ENST00000292476 LMOD2Q6P5Q4 547 aa21.99■■□□□ 1.11
CPSF4-201ENST00000292476 RCAN3Q9UKA8 241 aa21.99■■□□□ 1.11
CPSF4-201ENST00000292476 TNS3Q68CZ2 1445 aa21.98■■□□□ 1.11
CPSF4-201ENST00000292476 COL22A1Q8NFW1 1626 aaPredicted RBP21.98■■□□□ 1.11
CPSF4-201ENST00000292476 PLEKHG5O94827 1062 aa21.98■■□□□ 1.11
CPSF4-201ENST00000292476 NCBP3Q53F19 620 aaKnown RBP21.98■■□□□ 1.11
CPSF4-201ENST00000292476 CDK12Q9NYV4 1490 aaPredicted RBP21.98■■□□□ 1.11
CPSF4-201ENST00000292476 COL3A1P02461 1466 aaPredicted RBP21.98■■□□□ 1.11
CPSF4-201ENST00000292476 TRPM3Q9HCF6 1732 aaPredicted RBP21.98■■□□□ 1.11
CPSF4-201ENST00000292476 U2AF1L5P0DN76 240 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms