RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 GGNBP2Q9H3C7 697 aa25.66■■□□□ 1.7
PDLIM3-202ENST00000284770 MYBBP1AQ9BQG0 1328 aaKnown RBP25.66■■□□□ 1.7
PDLIM3-202ENST00000284770 BRD4O60885 1362 aaPredicted RBP25.66■■□□□ 1.7
PDLIM3-202ENST00000284770 PSME1Q06323 249 aa25.65■■□□□ 1.7
PDLIM3-202ENST00000284770 MORC1Q86VD1 984 aa25.65■■□□□ 1.7
PDLIM3-202ENST00000284770 TTC21AQ8NDW8 1320 aa25.64■■□□□ 1.7
PDLIM3-202ENST00000284770 NME9Q86XW9 330 aa25.64■■□□□ 1.69
PDLIM3-202ENST00000284770 BRINP3Q76B58 766 aa25.62■■□□□ 1.69
PDLIM3-202ENST00000284770 KIF20BQ96Q89 1820 aa25.62■■□□□ 1.69
PDLIM3-202ENST00000284770 PPP2R1AP30153 589 aa25.59■■□□□ 1.69
PDLIM3-202ENST00000284770 NLRP13Q86W25 1043 aa25.59■■□□□ 1.69
PDLIM3-202ENST00000284770 NPHP3Q7Z494 1330 aa25.58■■□□□ 1.69
PDLIM3-202ENST00000284770 ANKRD26Q9UPS8 1709 aa25.58■■□□□ 1.69
PDLIM3-202ENST00000284770 KRT28Q7Z3Y7 464 aa25.58■■□□□ 1.69
PDLIM3-202ENST00000284770 PAK3O75914 559 aaPredicted RBP25.57■■□□□ 1.68
PDLIM3-202ENST00000284770 COG3Q96JB2 828 aa25.57■■□□□ 1.68
PDLIM3-202ENST00000284770 ZRANB1Q9UGI0 708 aa25.57■■□□□ 1.68
PDLIM3-202ENST00000284770 XPCQ01831 940 aaPredicted RBP25.56■■□□□ 1.68
PDLIM3-202ENST00000284770 CCDC184Q52MB2 194 aa25.56■■□□□ 1.68
PDLIM3-202ENST00000284770 TNNT2P45379 298 aaPredicted RBP25.55■■□□□ 1.68
PDLIM3-202ENST00000284770 USP31Q70CQ4 1352 aa25.54■■□□□ 1.68
PDLIM3-202ENST00000284770 ABTB2Q8N961 1025 aa25.54■■□□□ 1.68
PDLIM3-202ENST00000284770 DDX17Q92841 729 aaKnown RBP25.54■■□□□ 1.68
PDLIM3-202ENST00000284770 MRS2Q9HD23 443 aa25.54■■□□□ 1.68
PDLIM3-202ENST00000284770 OVOS2A0A0J9YW53 1432 aa25.53■■□□□ 1.68
PDLIM3-202ENST00000284770 OVOS2Q6IE36 1432 aa25.53■■□□□ 1.68
PDLIM3-202ENST00000284770 SCAF1Q9H7N4 1312 aaKnown RBP25.53■■□□□ 1.68
PDLIM3-202ENST00000284770 PIK3C2AO00443 1686 aa25.52■■□□□ 1.68
PDLIM3-202ENST00000284770 IQSEC2Q5JU85 1478 aa25.52■■□□□ 1.68
PDLIM3-202ENST00000284770 NLRP6P59044 892 aa25.51■■□□□ 1.67
PDLIM3-202ENST00000284770 TRPM3Q9HCF6 1732 aaPredicted RBP25.51■■□□□ 1.67
PDLIM3-202ENST00000284770 PXDNQ92626 1479 aa25.5■■□□□ 1.67
PDLIM3-202ENST00000284770 TOM1O60784 492 aa25.5■■□□□ 1.67
PDLIM3-202ENST00000284770 SBNO1A3KN83 1393 aa25.5■■□□□ 1.67
PDLIM3-202ENST00000284770 CERKQ8TCT0 537 aa25.48■■□□□ 1.67
PDLIM3-202ENST00000284770 YTHDC1Q96MU7 727 aaKnown RBP25.47■■□□□ 1.67
PDLIM3-202ENST00000284770 SOS2Q07890 1332 aaPredicted RBP25.47■■□□□ 1.67
PDLIM3-202ENST00000284770 AATKQ6ZMQ8 1374 aa25.47■■□□□ 1.67
PDLIM3-202ENST00000284770 NUTM2GQ5VZR2 741 aa25.46■■□□□ 1.67
PDLIM3-202ENST00000284770 USP54Q70EL1 1684 aa25.46■■□□□ 1.67
PDLIM3-202ENST00000284770 MTHFSP49914 203 aa25.45■■□□□ 1.66
PDLIM3-202ENST00000284770 ROBO1Q9Y6N7 1651 aa25.44■■□□□ 1.66
PDLIM3-202ENST00000284770 FBLN1P23142 703 aa25.44■■□□□ 1.66
PDLIM3-202ENST00000284770 LMOD2Q6P5Q4 547 aa25.44■■□□□ 1.66
PDLIM3-202ENST00000284770 NHSL1Q5SYE7 1610 aa25.44■■□□□ 1.66
PDLIM3-202ENST00000284770 SPATA31A3Q5VYP0 1347 aa25.43■■□□□ 1.66
PDLIM3-202ENST00000284770 TNS3Q68CZ2 1445 aa25.43■■□□□ 1.66
PDLIM3-202ENST00000284770 ALS2Q96Q42 1657 aa25.43■■□□□ 1.66
PDLIM3-202ENST00000284770 UBAP1LF5GYI3 381 aa25.42■■□□□ 1.66
PDLIM3-202ENST00000284770 POLKQ9UBT6 870 aa25.42■■□□□ 1.66
PDLIM3-202ENST00000284770 MARF1Q9Y4F3 1742 aaKnown RBP25.42■■□□□ 1.66
PDLIM3-202ENST00000284770 PNISRQ8TF01 805 aaKnown RBP25.41■■□□□ 1.66
PDLIM3-202ENST00000284770 ARHGEF10O15013 1369 aa25.39■■□□□ 1.66
PDLIM3-202ENST00000284770 RRS1Q15050 365 aaKnown RBP25.38■■□□□ 1.65
PDLIM3-202ENST00000284770 CFAP53Q96M91 514 aa25.38■■□□□ 1.65
PDLIM3-202ENST00000284770 USP19O94966 1318 aa25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 SMG6Q86US8 1419 aaKnown RBP25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 SOX12O15370 315 aa25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 PIP4K2BP78356 416 aa25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 KCNH5Q8NCM2 988 aa25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 EMILIN1Q9Y6C2 1016 aa25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 AHDC1Q5TGY3 1603 aaPredicted RBP25.37■■□□□ 1.65
PDLIM3-202ENST00000284770 FAM9BQ8IZU0 186 aa25.36■■□□□ 1.65
PDLIM3-202ENST00000284770 MAP2P11137 1827 aaKnown RBP25.36■■□□□ 1.65
PDLIM3-202ENST00000284770 PNPLA6Q8IY17 1366 aa25.35■■□□□ 1.65
PDLIM3-202ENST00000284770 SLIT3O75094 1523 aa25.34■■□□□ 1.65
PDLIM3-202ENST00000284770 PPM1GO15355 546 aaPredicted RBP25.34■■□□□ 1.65
PDLIM3-202ENST00000284770 INSRP06213 1382 aa25.34■■□□□ 1.65
PDLIM3-202ENST00000284770 GCP02774 474 aa25.33■■□□□ 1.65
PDLIM3-202ENST00000284770 MAP3K19Q56UN5 1328 aa25.33■■□□□ 1.64
PDLIM3-202ENST00000284770 LRRC59Q96AG4 307 aaKnown RBP25.32■■□□□ 1.64
PDLIM3-202ENST00000284770 CDK12Q9NYV4 1490 aaPredicted RBP25.31■■□□□ 1.64
PDLIM3-202ENST00000284770 NFAT5O94916 1531 aa25.31■■□□□ 1.64
PDLIM3-202ENST00000284770 MED1Q15648 1581 aaPredicted RBP25.31■■□□□ 1.64
PDLIM3-202ENST00000284770 COL3A1P02461 1466 aaPredicted RBP25.29■■□□□ 1.64
PDLIM3-202ENST00000284770 PLEKHG5O94827 1062 aa25.28■■□□□ 1.64
PDLIM3-202ENST00000284770 WDR43Q15061 677 aaKnown RBP eCLIP25.28■■□□□ 1.64
PDLIM3-202ENST00000284770 KIF24Q5T7B8 1368 aa25.28■■□□□ 1.64
PDLIM3-202ENST00000284770 DIAPH1O60610 1272 aaKnown RBP25.27■■□□□ 1.64
PDLIM3-202ENST00000284770 FLT4P35916 1363 aa25.26■■□□□ 1.63
PDLIM3-202ENST00000284770 AMPHP49418 695 aa25.26■■□□□ 1.63
PDLIM3-202ENST00000284770 CABLES1Q8TDN4 633 aa25.26■■□□□ 1.63
PDLIM3-202ENST00000284770 PEAK1Q9H792 1746 aa25.26■■□□□ 1.63
PDLIM3-202ENST00000284770 ARHGEF25Q86VW2 580 aa25.26■■□□□ 1.63
PDLIM3-202ENST00000284770 ADAMTS8Q9UP79 889 aa25.26■■□□□ 1.63
PDLIM3-202ENST00000284770 PHLPP1O60346 1717 aa25.25■■□□□ 1.63
PDLIM3-202ENST00000284770 CENPBP07199 599 aaPredicted RBP25.25■■□□□ 1.63
PDLIM3-202ENST00000284770 NUDCQ9Y266 331 aa25.24■■□□□ 1.63
PDLIM3-202ENST00000284770 CRYBG1Q9Y4K1 1723 aa25.24■■□□□ 1.63
PDLIM3-202ENST00000284770 SHPRHQ149N8 1683 aa25.24■■□□□ 1.63
PDLIM3-202ENST00000284770 PHRF1Q9P1Y6 1649 aaKnown RBP25.24■■□□□ 1.63
PDLIM3-202ENST00000284770 HSP90AB2PQ58FF8 381 aa25.23■■□□□ 1.63
PDLIM3-202ENST00000284770 COL16A1Q07092 1604 aaPredicted RBP25.23■■□□□ 1.63
PDLIM3-202ENST00000284770 RTL1A6NKG5 1358 aa25.23■■□□□ 1.63
PDLIM3-202ENST00000284770 HOXC9P31274 260 aa25.22■■□□□ 1.63
PDLIM3-202ENST00000284770 IL13P35225 146 aa25.21■■□□□ 1.63
PDLIM3-202ENST00000284770 IP6K1Q92551 441 aa25.21■■□□□ 1.63
PDLIM3-202ENST00000284770 LTN1O94822 1766 aa25.21■■□□□ 1.63
PDLIM3-202ENST00000284770 ZC3H6P61129 1189 aaKnown RBP25.21■■□□□ 1.63
PDLIM3-202ENST00000284770 U2SURPO15042 1029 aaKnown RBP25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms