RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 RPIAP49247 311 aa7.33□□□□□ -1.24
CD44-202ENST00000278385 SHROOM4Q9ULL8 1493 aa7.32□□□□□ -1.24
CD44-202ENST00000278385 KCNH2Q12809 1159 aa7.32□□□□□ -1.24
CD44-202ENST00000278385 EVA1BQ9NVM1 165 aa7.32□□□□□ -1.24
CD44-202ENST00000278385 CTDSPL2Q05D32 466 aa7.31□□□□□ -1.24
CD44-202ENST00000278385 BANK1Q8NDB2 785 aa7.31□□□□□ -1.24
CD44-202ENST00000278385 USP17L8P0C7I0 530 aa7.3□□□□□ -1.24
CD44-202ENST00000278385 AGERQ15109 404 aa7.29□□□□□ -1.24
CD44-202ENST00000278385 NBPF14Q5TI25 921 aa7.29□□□□□ -1.24
CD44-202ENST00000278385 UNC13AQ9UPW8 1703 aa7.29□□□□□ -1.24
CD44-202ENST00000278385 PDIA4P13667 645 aaKnown RBP7.28□□□□□ -1.24
CD44-202ENST00000278385 TRIM32Q13049 653 aa7.28□□□□□ -1.24
CD44-202ENST00000278385 ARID3AQ99856 593 aa7.28□□□□□ -1.24
CD44-202ENST00000278385 UNC93B1Q9H1C4 597 aa7.28□□□□□ -1.24
CD44-202ENST00000278385 SCRIBQ14160 1630 aa7.27□□□□□ -1.25
CD44-202ENST00000278385 ZNF697Q5TEC3 545 aa7.27□□□□□ -1.25
CD44-202ENST00000278385 SPRYD7Q5W111 196 aa7.27□□□□□ -1.25
CD44-202ENST00000278385 ZNF598Q86UK7 904 aaKnown RBP7.27□□□□□ -1.25
CD44-202ENST00000278385 PER1O15534 1290 aaPredicted RBP7.26□□□□□ -1.25
CD44-202ENST00000278385 WNT7BP56706 349 aa7.26□□□□□ -1.25
CD44-202ENST00000278385 FLIIQ13045 1269 aa7.26□□□□□ -1.25
CD44-202ENST00000278385 LIAT1Q6ZQX7 453 aa7.26□□□□□ -1.25
CD44-202ENST00000278385 WWC1Q8IX03 1113 aa7.26□□□□□ -1.25
CD44-202ENST00000278385 MAP10Q9P2G4 905 aa7.26□□□□□ -1.25
CD44-202ENST00000278385 FOXC1Q12948 553 aa7.25□□□□□ -1.25
CD44-202ENST00000278385 LRRN4Q8WUT4 740 aa7.25□□□□□ -1.25
CD44-202ENST00000278385 GPKOWQ92917 476 aaPredicted RBP eCLIP7.25□□□□□ -1.25
CD44-202ENST00000278385 C1orf115Q9H7X2 142 aa7.25□□□□□ -1.25
CD44-202ENST00000278385 ZC3H4Q9UPT8 1303 aaKnown RBP7.25□□□□□ -1.25
CD44-202ENST00000278385 RAD21O60216 631 aa7.24□□□□□ -1.25
CD44-202ENST00000278385 F12P00748 615 aaPredicted RBP7.24□□□□□ -1.25
CD44-202ENST00000278385 PLA2G2CQ5R387 149 aa7.24□□□□□ -1.25
CD44-202ENST00000278385 BPHLQ86WA6 291 aaPredicted RBP7.24□□□□□ -1.25
CD44-202ENST00000278385 EHBP1Q8NDI1 1231 aa7.24□□□□□ -1.25
CD44-202ENST00000278385 BAP1Q92560 729 aa7.24□□□□□ -1.25
CD44-202ENST00000278385 LAPTM4AQ15012 233 aa7.23□□□□□ -1.25
CD44-202ENST00000278385 NR6A1Q15406 480 aa7.23□□□□□ -1.25
CD44-202ENST00000278385 LINC01559Q495D7 138 aa7.23□□□□□ -1.25
CD44-202ENST00000278385 PTCRAQ6ISU1 281 aaPredicted RBP7.23□□□□□ -1.25
CD44-202ENST00000278385 FKBPLQ9UIM3 349 aa7.23□□□□□ -1.25
CD44-202ENST00000278385 ZNF330Q9Y3S2 320 aaPredicted RBP7.23□□□□□ -1.25
CD44-202ENST00000278385 PTK2Q05397 1052 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 ZBTB33Q86T24 672 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 CYP4X1Q8N118 509 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 ZNF511Q8NB15 262 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 ZNF592Q92610 1267 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 PDZRN3Q9UPQ7 1066 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 NDUFB9Q9Y6M9 179 aa7.22□□□□□ -1.25
CD44-202ENST00000278385 TTC24A2A3L6 582 aaPredicted RBP7.21□□□□□ -1.26
CD44-202ENST00000278385 SOCS7O14512 581 aa7.21□□□□□ -1.26
CD44-202ENST00000278385 HMGB1P09429 215 aaKnown RBP7.21□□□□□ -1.26
CD44-202ENST00000278385 RC3H1Q5TC82 1133 aaKnown RBP7.21□□□□□ -1.26
CD44-202ENST00000278385 FAM174AQ8TBP5 190 aa7.21□□□□□ -1.26
CD44-202ENST00000278385 IRX2Q9BZI1 471 aaPredicted RBP7.21□□□□□ -1.26
CD44-202ENST00000278385 MAGEB6P1A0A0J9YX57 407 aa7.2□□□□□ -1.26
CD44-202ENST00000278385 WNT7AO00755 349 aa7.2□□□□□ -1.26
CD44-202ENST00000278385 IGSF3O75054 1194 aa7.2□□□□□ -1.26
CD44-202ENST00000278385 VARSP26640 1264 aaKnown RBP7.2□□□□□ -1.26
CD44-202ENST00000278385 ARHGAP9Q9BRR9 750 aa7.2□□□□□ -1.26
CD44-202ENST00000278385 CECR2Q9BXF3 1484 aa7.19□□□□□ -1.26
CD44-202ENST00000278385 GFRA3O60609 400 aa7.19□□□□□ -1.26
CD44-202ENST00000278385 FBXO31Q5XUX0 539 aaPredicted RBP7.19□□□□□ -1.26
CD44-202ENST00000278385 PDXDC2PQ6P474 469 aa7.19□□□□□ -1.26
CD44-202ENST00000278385 SNRKQ9NRH2 765 aa7.19□□□□□ -1.26
CD44-202ENST00000278385 GPSM3Q9Y4H4 160 aa7.19□□□□□ -1.26
CD44-202ENST00000278385 EIF4G1Q04637 1599 aaKnown RBP7.18□□□□□ -1.26
CD44-202ENST00000278385 SH3BP2P78314 561 aa7.18□□□□□ -1.26
CD44-202ENST00000278385 TRIM52Q96A61 297 aa7.18□□□□□ -1.26
CD44-202ENST00000278385 CARD14Q9BXL6 1004 aa7.18□□□□□ -1.26
CD44-202ENST00000278385 TNFRSF10AO00220 468 aa7.17□□□□□ -1.26
CD44-202ENST00000278385 ARID5BQ14865 1188 aa7.17□□□□□ -1.26
CD44-202ENST00000278385 SNIP1Q8TAD8 396 aaKnown RBP7.17□□□□□ -1.26
CD44-202ENST00000278385 HMX1Q9NP08 348 aaPredicted RBP7.17□□□□□ -1.26
CD44-202ENST00000278385 WASF2Q9Y6W5 498 aa7.17□□□□□ -1.26
CD44-202ENST00000278385 CC2D2AQ9P2K1 1620 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 PRR20EP86478 221 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 PRR20CP86479 221 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 PRR20DP86480 221 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 PRR20BP86481 221 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 PRR20AP86496 221 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 PKDCCQ504Y2 493 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 MTMR14Q8NCE2 650 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 SLC10A4Q96EP9 437 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 MRGPRX2Q96LB1 330 aa7.16□□□□□ -1.26
CD44-202ENST00000278385 CDV3Q9UKY7 258 aaKnown RBP7.16□□□□□ -1.26
CD44-202ENST00000278385 NRG2O14511 850 aaPredicted RBP7.15□□□□□ -1.26
CD44-202ENST00000278385 ALDH1A1P00352 501 aa7.15□□□□□ -1.26
CD44-202ENST00000278385 ABL2P42684 1182 aa7.15□□□□□ -1.26
CD44-202ENST00000278385 SKOR1P84550 965 aa7.15□□□□□ -1.26
CD44-202ENST00000278385 MCM6Q14566 821 aa7.15□□□□□ -1.26
CD44-202ENST00000278385 DZIP3Q86Y13 1208 aaKnown RBP7.15□□□□□ -1.26
CD44-202ENST00000278385 EMID1Q96A84 441 aaPredicted RBP7.15□□□□□ -1.26
CD44-202ENST00000278385 ZBBXA8MT70 800 aa7.14□□□□□ -1.27
CD44-202ENST00000278385 HSP90B1P14625 803 aaKnown RBP7.14□□□□□ -1.27
CD44-202ENST00000278385 CDK11BP21127 795 aaKnown RBP7.14□□□□□ -1.27
CD44-202ENST00000278385 MCCD1P59942 119 aaPredicted RBP7.14□□□□□ -1.27
CD44-202ENST00000278385 WASHC4Q2M389 1173 aa7.14□□□□□ -1.27
CD44-202ENST00000278385 EPS8L1Q8TE68 723 aa7.14□□□□□ -1.27
CD44-202ENST00000278385 FOXJ1Q92949 421 aa7.14□□□□□ -1.27
CD44-202ENST00000278385 TRIM34Q9BYJ4 488 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms