RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 MAPKBP1O60336 1514 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 MBD3O95983 291 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 TBC1D2BQ9UPU7 963 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 ANKRD36BQ8N2N9 1353 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 SF3A1Q15459 793 aaKnown RBP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 CAVIN1Q6NZI2 390 aaKnown RBP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 CDC45O75419 566 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 JMYQ8N9B5 988 aa5.21□□□□□ -1.57
VPS13C-202ENST00000261517 B4GALNT3Q6L9W6 998 aa5.21□□□□□ -1.57
VPS13C-202ENST00000261517 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.21□□□□□ -1.574e-6■■■□□ 17.3
VPS13C-202ENST00000261517 GOLGA6L19H0YKK7 550 aa5.21□□□□□ -1.57
VPS13C-202ENST00000261517 CHMP5Q9NZZ3 219 aa5.21□□□□□ -1.57
VPS13C-202ENST00000261517 CIZ1Q9ULV3 898 aaPredicted RBP5.21□□□□□ -1.57
VPS13C-202ENST00000261517 MYO6Q9UM54 1294 aa5.21□□□□□ -1.57
VPS13C-202ENST00000261517 TTC21AQ8NDW8 1320 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 ARAP3Q8WWN8 1544 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 TATP17735 454 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-202ENST00000261517 RABEP1Q15276 862 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 DNAJC5BQ9UF47 199 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 KRT32Q14532 448 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 BCL11BQ9C0K0 894 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-202ENST00000261517 FRAT2O75474 233 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-202ENST00000261517 CLUAP1Q96AJ1 413 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 HSP90AB3PQ58FF7 597 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 TXNDC2Q86VQ3 553 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 AEBP1Q8IUX7 1158 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 TEX13AQ9BXU3 409 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-202ENST00000261517 ZNF287Q9HBT7 754 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 TARBP1Q13395 1621 aaKnown RBP5.21□□□□□ -1.58
VPS13C-202ENST00000261517 HSP90AA2PQ14568 343 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-202ENST00000261517 DNAI2Q9GZS0 605 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 CHMP3Q9Y3E7 222 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC61Q9Y6R9 512 aa5.21□□□□□ -1.58
VPS13C-202ENST00000261517 ACBD3Q9H3P7 528 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 TSPYL4Q9UJ04 414 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 A2MP01023 1474 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 RAB11FIP3O75154 756 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 UBTFL1P0CB47 393 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-202ENST00000261517 IRX6P78412 446 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-202ENST00000261517 NPC1L1Q9UHC9 1359 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 CDR1P51861 262 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 MINK1Q8N4C8 1332 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-202ENST00000261517 DCAF8L1A6NGE4 600 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 VPS37DQ86XT2 251 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 CDKL5O76039 1030 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 TRPM2O94759 1503 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 ASXL1Q8IXJ9 1541 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 CPLX1O14810 134 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 CLASRPQ8N2M8 674 aaKnown RBP5.2□□□□□ -1.58
VPS13C-202ENST00000261517 CTNNA3Q9UI47 895 aa5.2□□□□□ -1.58
VPS13C-202ENST00000261517 RBM19Q9Y4C8 960 aaKnown RBP5.2□□□□□ -1.58
VPS13C-202ENST00000261517 LUC7LQ9NQ29 371 aaKnown RBP5.19□□□□□ -1.58
VPS13C-202ENST00000261517 MAGI2Q86UL8 1455 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 CTDP1Q9Y5B0 961 aaPredicted RBP5.19□□□□□ -1.58
VPS13C-202ENST00000261517 GNAI2P04899 355 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 RALYLQ86SE5 291 aaKnown RBP5.19□□□□□ -1.58
VPS13C-202ENST00000261517 ZNF652Q9Y2D9 606 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 SLC4A10Q6U841 1118 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 KDM5AP29375 1690 aaKnown RBP5.19□□□□□ -1.58
VPS13C-202ENST00000261517 RASSF8Q8NHQ8 419 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 ZNF396Q96N95 335 aaPredicted RBP5.19□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC9Q9Y3X0 531 aaKnown RBP5.19□□□□□ -1.58
VPS13C-202ENST00000261517 IFT57Q9NWB7 429 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 MARCH6O60337 910 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 WASF1Q92558 559 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 KDM5DQ9BY66 1539 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 PTPRCP08575 1304 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC146Q8IYE0 955 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 ANKRD45Q5TZF3 282 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 DACH1Q9UI36 760 aa5.19□□□□□ -1.58
VPS13C-202ENST00000261517 PPP2R1AP30153 589 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 FKBP5Q13451 457 aaPredicted RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 MEX3CQ5U5Q3 659 aaKnown RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 RBM33Q96EV2 1170 aaKnown RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 NACAP1Q9BZK3 213 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 ZSCAN31Q96LW9 406 aaPredicted RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 MAP7D2Q96T17 732 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 NOC3LQ8WTT2 800 aaKnown RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 PKNOX2Q96KN3 472 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 GTPBP4Q9BZE4 634 aaKnown RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 TPD52L1Q16890 204 aaPredicted RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 BABAM1Q9NWV8 329 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 TXLNAP40222 546 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 SLF2Q8IX21 1173 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 RPAP2Q8IXW5 612 aaPredicted RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 NAP1L5Q96NT1 182 aaPredicted RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 PYM1Q9BRP8 204 aaKnown RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 NUP153P49790 1475 aaKnown RBP5.18□□□□□ -1.58
VPS13C-202ENST00000261517 BECN2A8MW95 431 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC73Q6ZRK6 1079 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 TRAF1Q13077 416 aa5.18□□□□□ -1.58
VPS13C-202ENST00000261517 APAF1O14727 1248 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ABTB2Q8N961 1025 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 RSPH6AQ9H0K4 717 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ADCY10Q96PN6 1610 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 AKAP2Q9Y2D5 859 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ATP10BO94823 1461 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ASXL2Q76L83 1435 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 NLRP6P59044 892 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 CDK19Q9BWU1 502 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms