RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 ZNF330Q9Y3S2 320 aaPredicted RBP8.85□□□□□ -0.99
CCDC54-201ENST00000261058 S1PR4O95977 384 aa8.84□□□□□ -0.99
CCDC54-201ENST00000261058 WASHC4Q2M389 1173 aa8.84□□□□□ -0.99
CCDC54-201ENST00000261058 WWC1Q8IX03 1113 aa8.84□□□□□ -0.99
CCDC54-201ENST00000261058 POM121CA8CG34 1229 aa8.82□□□□□ -1
CCDC54-201ENST00000261058 PNMA1Q8ND90 353 aa8.82□□□□□ -1
CCDC54-201ENST00000261058 ZNF777Q9ULD5 760 aaPredicted RBP8.82□□□□□ -1
CCDC54-201ENST00000261058 PTCRAQ6ISU1 281 aaPredicted RBP8.81□□□□□ -1
CCDC54-201ENST00000261058 GPKOWQ92917 476 aaPredicted RBP eCLIP8.81□□□□□ -1
CCDC54-201ENST00000261058 ARMC2Q8NEN0 867 aa8.8□□□□□ -1
CCDC54-201ENST00000261058 ADAMTS19Q8TE59 1207 aa8.8□□□□□ -1
CCDC54-201ENST00000261058 CTHP32929 405 aa8.8□□□□□ -1
CCDC54-201ENST00000261058 UNC93B1Q9H1C4 597 aa8.8□□□□□ -1
CCDC54-201ENST00000261058 FCF1Q9Y324 198 aaKnown RBP8.8□□□□□ -1
CCDC54-201ENST00000261058 GPSM3Q9Y4H4 160 aa8.8□□□□□ -1
CCDC54-201ENST00000261058 VAC14Q08AM6 782 aa8.79□□□□□ -1
CCDC54-201ENST00000261058 PDXDC2PQ6P474 469 aa8.79□□□□□ -1
CCDC54-201ENST00000261058 OCSTAMPQ9BR26 566 aa8.79□□□□□ -1
CCDC54-201ENST00000261058 RNF223E7ERA6 249 aa8.78□□□□□ -1
CCDC54-201ENST00000261058 FBXO45P0C2W1 286 aa8.78□□□□□ -1
CCDC54-201ENST00000261058 NR1H3Q13133 447 aa8.78□□□□□ -1
CCDC54-201ENST00000261058 ALG2Q9H553 416 aa8.78□□□□□ -1
CCDC54-201ENST00000261058 ZBBXA8MT70 800 aa8.77□□□□□ -1.01
CCDC54-201ENST00000261058 SOX11P35716 441 aa8.77□□□□□ -1.01
CCDC54-201ENST00000261058 NBPF14Q5TI25 921 aa8.77□□□□□ -1.01
CCDC54-201ENST00000261058 CCDC82Q8N4S0 544 aa8.77□□□□□ -1.01
CCDC54-201ENST00000261058 ANKLE1Q8NAG6 615 aa8.77□□□□□ -1.01
CCDC54-201ENST00000261058 GLMNQ92990 594 aa8.77□□□□□ -1.01
CCDC54-201ENST00000261058 IRX2Q9BZI1 471 aaPredicted RBP8.77□□□□□ -1.01
CCDC54-201ENST00000261058 SH3BP5LQ7L8J4 393 aa8.76□□□□□ -1.01
CCDC54-201ENST00000261058 SH3RF1Q7Z6J0 888 aa8.75□□□□□ -1.01
CCDC54-201ENST00000261058 CCDC24Q8N4L8 307 aa8.75□□□□□ -1.01
CCDC54-201ENST00000261058 PPEF1O14829 653 aaPredicted RBP8.74□□□□□ -1.01
CCDC54-201ENST00000261058 PLA2G2CQ5R387 149 aa8.74□□□□□ -1.01
CCDC54-201ENST00000261058 PPP1R18Q6NYC8 613 aa8.74□□□□□ -1.01
CCDC54-201ENST00000261058 SERPINA10Q9UK55 444 aa8.74□□□□□ -1.01
CCDC54-201ENST00000261058 GGCXP38435 758 aa8.73□□□□□ -1.01
CCDC54-201ENST00000261058 PTK2Q05397 1052 aa8.73□□□□□ -1.01
CCDC54-201ENST00000261058 HDGFL1Q5TGJ6 251 aa8.73□□□□□ -1.01
CCDC54-201ENST00000261058 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.73□□□□□ -1.01
CCDC54-201ENST00000261058 CALR3Q96L12 384 aaKnown RBP8.72□□□□□ -1.01
CCDC54-201ENST00000261058 EIF4G2P78344 907 aaKnown RBP eCLIP8.71□□□□□ -1.01
CCDC54-201ENST00000261058 ZNF511Q8NB15 262 aa8.71□□□□□ -1.01
CCDC54-201ENST00000261058 BAP1Q92560 729 aa8.71□□□□□ -1.01
CCDC54-201ENST00000261058 ARXQ96QS3 562 aa8.71□□□□□ -1.02
CCDC54-201ENST00000261058 RPIAP49247 311 aa8.7□□□□□ -1.02
CCDC54-201ENST00000261058 C4orf48Q5BLP8 95 aa8.7□□□□□ -1.02
CCDC54-201ENST00000261058 EMID1Q96A84 441 aaPredicted RBP8.7□□□□□ -1.02
CCDC54-201ENST00000261058 CCDC97Q96F63 343 aaPredicted RBP8.7□□□□□ -1.02
CCDC54-201ENST00000261058 UCN2Q96RP3 112 aa8.7□□□□□ -1.02
CCDC54-201ENST00000261058 SH3BP2P78314 561 aa8.69□□□□□ -1.02
CCDC54-201ENST00000261058 TRIM32Q13049 653 aa8.69□□□□□ -1.02
CCDC54-201ENST00000261058 ADAM32Q8TC27 787 aa8.69□□□□□ -1.02
CCDC54-201ENST00000261058 ARHGAP9Q9BRR9 750 aa8.69□□□□□ -1.02
CCDC54-201ENST00000261058 C1QTNF2Q9BXJ5 285 aa8.69□□□□□ -1.02
CCDC54-201ENST00000261058 MCCD1P59942 119 aaPredicted RBP8.68□□□□□ -1.02
CCDC54-201ENST00000261058 SEMA3FQ13275 785 aa8.68□□□□□ -1.02
CCDC54-201ENST00000261058 BPHLQ86WA6 291 aaPredicted RBP8.68□□□□□ -1.02
CCDC54-201ENST00000261058 WNT7BP56706 349 aa8.67□□□□□ -1.02
CCDC54-201ENST00000261058 ZNF592Q92610 1267 aa8.67□□□□□ -1.02
CCDC54-201ENST00000261058 FOXJ1Q92949 421 aa8.67□□□□□ -1.02
CCDC54-201ENST00000261058 SKOR1P84550 965 aa8.66□□□□□ -1.02
CCDC54-201ENST00000261058 LINC01559Q495D7 138 aa8.66□□□□□ -1.02
CCDC54-201ENST00000261058 TRMT44Q8IYL2 757 aaKnown RBP8.66□□□□□ -1.02
CCDC54-201ENST00000261058 ARID3AQ99856 593 aa8.66□□□□□ -1.02
CCDC54-201ENST00000261058 ZBTB24O43167 697 aaPredicted RBP8.65□□□□□ -1.02
CCDC54-201ENST00000261058 ERFEQ4G0M1 354 aa8.65□□□□□ -1.02
CCDC54-201ENST00000261058 CFAP70Q5T0N1 1121 aa8.65□□□□□ -1.02
CCDC54-201ENST00000261058 PPP1R12CQ9BZL4 782 aa8.65□□□□□ -1.02
CCDC54-201ENST00000261058 LIAT1Q6ZQX7 453 aa8.64□□□□□ -1.03
CCDC54-201ENST00000261058 ZBTB33Q86T24 672 aa8.64□□□□□ -1.03
CCDC54-201ENST00000261058 NFATC2IPQ8NCF5 419 aa8.64□□□□□ -1.03
CCDC54-201ENST00000261058 CEP126Q9P2H0 1117 aa8.64□□□□□ -1.03
CCDC54-201ENST00000261058 CHIC2Q9UKJ5 165 aa8.64□□□□□ -1.03
CCDC54-201ENST00000261058 SRPK2P78362 688 aaKnown RBP8.63□□□□□ -1.03
CCDC54-201ENST00000261058 PHTF2Q8N3S3 785 aa8.63□□□□□ -1.03
CCDC54-201ENST00000261058 PALM3A6NDB9 673 aaPredicted RBP8.63□□□□□ -1.03
CCDC54-201ENST00000261058 MAGEB6P1A0A0J9YX57 407 aa8.62□□□□□ -1.03
CCDC54-201ENST00000261058 CARD14Q9BXL6 1004 aa8.62□□□□□ -1.03
CCDC54-201ENST00000261058 PCDHB9Q9Y5E1 797 aa8.62□□□□□ -1.03
CCDC54-201ENST00000261058 PIK3CDO00329 1044 aa8.61□□□□□ -1.03
CCDC54-201ENST00000261058 ATP9BO43861 1147 aa8.61□□□□□ -1.03
CCDC54-201ENST00000261058 CD2BP2O95400 341 aaKnown RBP8.61□□□□□ -1.03
CCDC54-201ENST00000261058 VARSP26640 1264 aaKnown RBP8.61□□□□□ -1.03
CCDC54-201ENST00000261058 TBC1D9Q6ZT07 1266 aa8.61□□□□□ -1.03
CCDC54-201ENST00000261058 TFIP11Q9UBB9 837 aaKnown RBP8.61□□□□□ -1.03
CCDC54-201ENST00000261058 MAFBQ9Y5Q3 323 aaPredicted RBP8.61□□□□□ -1.03
CCDC54-201ENST00000261058 ESPNB1AK53 854 aa8.6□□□□□ -1.03
CCDC54-201ENST00000261058 AGERQ15109 404 aa8.6□□□□□ -1.03
CCDC54-201ENST00000261058 HOMEZQ8IX15 550 aa8.6□□□□□ -1.03
CCDC54-201ENST00000261058 FAM174AQ8TBP5 190 aa8.6□□□□□ -1.03
CCDC54-201ENST00000261058 MAP4K5Q9Y4K4 846 aa8.6□□□□□ -1.03
CCDC54-201ENST00000261058 PPP1R15AO75807 674 aaPredicted RBP8.59□□□□□ -1.03
CCDC54-201ENST00000261058 SLC19A1P41440 591 aa8.59□□□□□ -1.03
CCDC54-201ENST00000261058 LAPTM4AQ15012 233 aa8.59□□□□□ -1.03
CCDC54-201ENST00000261058 DZIP3Q86Y13 1208 aaKnown RBP8.59□□□□□ -1.03
CCDC54-201ENST00000261058 MPNDQ8N594 471 aa8.59□□□□□ -1.03
CCDC54-201ENST00000261058 CDV3Q9UKY7 258 aaKnown RBP8.59□□□□□ -1.03
CCDC54-201ENST00000261058 RC3H1Q5TC82 1133 aaKnown RBP8.58□□□□□ -1.04
CCDC54-201ENST00000261058 PLEKHM2Q8IWE5 1019 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms