RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TTC21AQ8NDW8 1320 aa14.78□□□□□ -0.04
VPS4A-201ENST00000254950 CLUAP1Q96AJ1 413 aa14.78□□□□□ -0.04
VPS4A-201ENST00000254950 METP08581 1390 aa14.78□□□□□ -0.04
VPS4A-201ENST00000254950 GAS2L2Q8NHY3 880 aa14.78□□□□□ -0.04
VPS4A-201ENST00000254950 BCL2L13Q9BXK5 485 aa14.78□□□□□ -0.04
VPS4A-201ENST00000254950 ITPRIPQ8IWB1 547 aa14.77□□□□□ -0.04
VPS4A-201ENST00000254950 SMG6Q86US8 1419 aaKnown RBP14.77□□□□□ -0.04
VPS4A-201ENST00000254950 C19orf44Q9H6X5 657 aa14.77□□□□□ -0.05
VPS4A-201ENST00000254950 PLIN1O60240 522 aa14.76□□□□□ -0.05
VPS4A-201ENST00000254950 MSH6P52701 1360 aa14.75□□□□□ -0.05
VPS4A-201ENST00000254950 WDR63Q8IWG1 891 aa14.75□□□□□ -0.05
VPS4A-201ENST00000254950 FRMPD1Q5SYB0 1578 aa14.75□□□□□ -0.05
VPS4A-201ENST00000254950 PLEKHH1Q9ULM0 1364 aa14.75□□□□□ -0.05
VPS4A-201ENST00000254950 KRT28Q7Z3Y7 464 aa14.75□□□□□ -0.05
VPS4A-201ENST00000254950 ZKSCAN2Q63HK3 967 aa14.74□□□□□ -0.05
VPS4A-201ENST00000254950 TRPM1Q7Z4N2 1603 aa14.74□□□□□ -0.05
VPS4A-201ENST00000254950 VWDEQ8N2E2 1590 aa14.74□□□□□ -0.05
VPS4A-201ENST00000254950 ZC3H13Q5T200 1668 aaKnown RBP14.74□□□□□ -0.05
VPS4A-201ENST00000254950 RGS3P49796 1198 aa14.73□□□□□ -0.05
VPS4A-201ENST00000254950 TMPOP42166 694 aaKnown RBP14.73□□□□□ -0.05
VPS4A-201ENST00000254950 CLTCQ00610 1675 aaKnown RBP14.73□□□□□ -0.05
VPS4A-201ENST00000254950 DEPDC5O75140 1603 aa14.73□□□□□ -0.05
VPS4A-201ENST00000254950 POLR3AO14802 1390 aaPredicted RBP14.72□□□□□ -0.05
VPS4A-201ENST00000254950 ZC3H6P61129 1189 aaKnown RBP14.72□□□□□ -0.05
VPS4A-201ENST00000254950 PLEKHO1Q53GL0 409 aaPredicted RBP14.72□□□□□ -0.05
VPS4A-201ENST00000254950 PRDM11Q9NQV5 511 aa14.72□□□□□ -0.05
VPS4A-201ENST00000254950 TSPYL4Q9UJ04 414 aa14.72□□□□□ -0.05
VPS4A-201ENST00000254950 MADDQ8WXG6 1647 aa14.72□□□□□ -0.05
VPS4A-201ENST00000254950 NFE2L2Q16236 605 aa14.72□□□□□ -0.05
VPS4A-201ENST00000254950 WWC1Q8IX03 1113 aa14.72□□□□□ -0.05
VPS4A-201ENST00000254950 KDM5AP29375 1690 aaKnown RBP14.71□□□□□ -0.06
VPS4A-201ENST00000254950 EXOC6Q8TAG9 804 aa14.71□□□□□ -0.06
VPS4A-201ENST00000254950 RWDD1Q9H446 243 aaPredicted RBP14.71□□□□□ -0.06
VPS4A-201ENST00000254950 RICTORQ6R327 1708 aa14.7□□□□□ -0.06
VPS4A-201ENST00000254950 FBLN1P23142 703 aa14.7□□□□□ -0.06
VPS4A-201ENST00000254950 ZRANB1Q9UGI0 708 aa14.7□□□□□ -0.06
VPS4A-201ENST00000254950 EDC4Q6P2E9 1401 aaKnown RBP14.7□□□□□ -0.06
VPS4A-201ENST00000254950 CRBNQ96SW2 442 aa14.69□□□□□ -0.06
VPS4A-201ENST00000254950 SYNMO15061 1565 aa14.69□□□□□ -0.06
VPS4A-201ENST00000254950 PLEKHG3A1L390 1219 aa14.69□□□□□ -0.06
VPS4A-201ENST00000254950 NPHP3Q7Z494 1330 aa14.69□□□□□ -0.06
VPS4A-201ENST00000254950 POLKQ9UBT6 870 aa14.69□□□□□ -0.06
VPS4A-201ENST00000254950 NPHP4O75161 1426 aaPredicted RBP14.69□□□□□ -0.06
VPS4A-201ENST00000254950 FAM135BQ49AJ0 1406 aa14.69□□□□□ -0.06
VPS4A-201ENST00000254950 EXOSC9Q06265 439 aaKnown RBP14.68□□□□□ -0.06
VPS4A-201ENST00000254950 KIF16BQ96L93 1317 aa14.68□□□□□ -0.06
VPS4A-201ENST00000254950 SLFN5Q08AF3 891 aa14.68□□□□□ -0.06
VPS4A-201ENST00000254950 TATP17735 454 aaPredicted RBP14.68□□□□□ -0.06
VPS4A-201ENST00000254950 SLC4A10Q6U841 1118 aa14.68□□□□□ -0.06
VPS4A-201ENST00000254950 ROBO2Q9HCK4 1378 aa14.68□□□□□ -0.06
VPS4A-201ENST00000254950 COG6Q9Y2V7 657 aa14.68□□□□□ -0.06
VPS4A-201ENST00000254950 PIK3R4Q99570 1358 aa14.67□□□□□ -0.06
VPS4A-201ENST00000254950 TSR2Q969E8 191 aaKnown RBP14.67□□□□□ -0.06
VPS4A-201ENST00000254950 TTC5Q8N0Z6 440 aa14.67□□□□□ -0.06
VPS4A-201ENST00000254950 API5Q9BZZ5 524 aaKnown RBP14.67□□□□□ -0.06
VPS4A-201ENST00000254950 TCERG1O14776 1098 aaKnown RBP14.66□□□□□ -0.06
VPS4A-201ENST00000254950 ZNF530Q6P9A1 599 aaPredicted RBP14.66□□□□□ -0.06
VPS4A-201ENST00000254950 DZIP1LQ8IYY4 767 aaKnown RBP14.66□□□□□ -0.06
VPS4A-201ENST00000254950 CT47B1P0C2W7 299 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-201ENST00000254950 STRN4Q9NRL3 753 aa14.65□□□□□ -0.06
VPS4A-201ENST00000254950 ALKQ9UM73 1620 aa14.65□□□□□ -0.06
VPS4A-201ENST00000254950 MROH1Q8NDA8 1641 aa14.65□□□□□ -0.06
VPS4A-201ENST00000254950 TOM1L2Q6ZVM7 507 aa14.65□□□□□ -0.06
VPS4A-201ENST00000254950 HSP90AB2PQ58FF8 381 aa14.64□□□□□ -0.07
VPS4A-201ENST00000254950 OS9Q13438 667 aaPredicted RBP14.64□□□□□ -0.07
VPS4A-201ENST00000254950 SETBP1Q9Y6X0 1596 aa14.64□□□□□ -0.07
VPS4A-201ENST00000254950 EIF2S2P20042 333 aaKnown RBP14.64□□□□□ -0.07
VPS4A-201ENST00000254950 HDAC5Q9UQL6 1122 aa14.64□□□□□ -0.07
VPS4A-201ENST00000254950 ZNF330Q9Y3S2 320 aaPredicted RBP14.64□□□□□ -0.07
VPS4A-201ENST00000254950 NEXMIFQ5QGS0 1516 aa14.63□□□□□ -0.07
VPS4A-201ENST00000254950 DDX19BQ9UMR2 479 aa14.63□□□□□ -0.07
VPS4A-201ENST00000254950 PREX1Q8TCU6 1659 aa14.63□□□□□ -0.07
VPS4A-201ENST00000254950 PIP4K2BP78356 416 aa14.63□□□□□ -0.07
VPS4A-201ENST00000254950 TWISTNBQ3B726 338 aaPredicted RBP14.63□□□□□ -0.07
VPS4A-201ENST00000254950 USP35Q9P2H5 1018 aa14.63□□□□□ -0.07
VPS4A-201ENST00000254950 REREQ9P2R6 1566 aa14.63□□□□□ -0.07
VPS4A-201ENST00000254950 ORAI2Q96SN7 254 aa14.62□□□□□ -0.07
VPS4A-201ENST00000254950 SPG7Q9UQ90 795 aa14.62□□□□□ -0.07
VPS4A-201ENST00000254950 BCORL1Q5H9F3 1711 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 PIK3C2BO00750 1634 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 HMMRO75330 724 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 RTL5Q5HYW3 569 aaPredicted RBP14.61□□□□□ -0.07
VPS4A-201ENST00000254950 NECTIN2Q92692 538 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 SPATA31D1Q6ZQQ2 1576 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 FLT4P35916 1363 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 LAMC1P11047 1609 aa14.61□□□□□ -0.07
VPS4A-201ENST00000254950 THUMPD2Q9BTF0 503 aaKnown RBP14.6□□□□□ -0.07
VPS4A-201ENST00000254950 EIF4A2Q14240 407 aaKnown RBP14.6□□□□□ -0.07
VPS4A-201ENST00000254950 CENPQQ7L2Z9 268 aaPredicted RBP14.6□□□□□ -0.07
VPS4A-201ENST00000254950 GNAT3A8MTJ3 354 aa14.6□□□□□ -0.07
VPS4A-201ENST00000254950 NEURL4Q96JN8 1562 aa14.6□□□□□ -0.07
VPS4A-201ENST00000254950 BCAR3O75815 825 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 PDE3AQ14432 1141 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 USHBP1Q8N6Y0 703 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 PANK1Q8TE04 598 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 ZNF428Q96B54 188 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 MAP3K19Q56UN5 1328 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 ATP7BP35670 1465 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 EIF5BO60841 1220 aaKnown RBP14.59□□□□□ -0.07
VPS4A-201ENST00000254950 FKBP5Q13451 457 aaPredicted RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms