RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 XBP1P17861 261 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 ERC1Q8IUD2 1116 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 CHMP5Q9NZZ3 219 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 C22orf23Q9BZE7 217 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 LAMC3Q9Y6N6 1575 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 SLC3A2P08195 630 aaKnown RBP10.5□□□□□ -0.73
PTCD3-201ENST00000254630 SPG7Q9UQ90 795 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 MTMR7Q9Y216 660 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 HIP1O00291 1037 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 IPO7O95373 1038 aaKnown RBP10.5□□□□□ -0.73
PTCD3-201ENST00000254630 NUTM2BA6NNL0 878 aaPredicted RBP10.5□□□□□ -0.73
PTCD3-201ENST00000254630 NUTM2EB1AL46 878 aaPredicted RBP10.5□□□□□ -0.73
PTCD3-201ENST00000254630 GNAI3P08754 354 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 NUCB2P80303 420 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 NUTM2AQ8IVF1 878 aaPredicted RBP10.5□□□□□ -0.73
PTCD3-201ENST00000254630 CNKSR2Q8WXI2 1034 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.5□□□□□ -0.73
PTCD3-201ENST00000254630 GSE1Q14687 1217 aa10.5□□□□□ -0.73
PTCD3-201ENST00000254630 IKQ13123 557 aaPredicted RBP10.49□□□□□ -0.73
PTCD3-201ENST00000254630 CNNM1Q9NRU3 951 aa10.49□□□□□ -0.73
PTCD3-201ENST00000254630 CCDC73Q6ZRK6 1079 aa10.49□□□□□ -0.73
PTCD3-201ENST00000254630 OLFM4Q6UX06 510 aa10.49□□□□□ -0.73
PTCD3-201ENST00000254630 NOB1Q9ULX3 412 aaKnown RBP10.49□□□□□ -0.73
PTCD3-201ENST00000254630 DCAF8L1A6NGE4 600 aa10.49□□□□□ -0.73
PTCD3-201ENST00000254630 TNNT3P45378 269 aaPredicted RBP10.49□□□□□ -0.73
PTCD3-201ENST00000254630 SART3Q15020 963 aaKnown RBP10.49□□□□□ -0.73
PTCD3-201ENST00000254630 TWISTNBQ3B726 338 aaPredicted RBP10.49□□□□□ -0.73
PTCD3-201ENST00000254630 CAMSAP2Q08AD1 1489 aa10.49□□□□□ -0.73
PTCD3-201ENST00000254630 EPS15P42566 896 aa10.48□□□□□ -0.73
PTCD3-201ENST00000254630 GPS2Q13227 327 aa10.48□□□□□ -0.73
PTCD3-201ENST00000254630 TOM1L2Q6ZVM7 507 aa10.48□□□□□ -0.73
PTCD3-201ENST00000254630 ZNF692Q9BU19 519 aaPredicted RBP10.48□□□□□ -0.73
PTCD3-201ENST00000254630 PNISRQ8TF01 805 aaKnown RBP10.48□□□□□ -0.73
PTCD3-201ENST00000254630 TCP11L2Q8N4U5 519 aa10.48□□□□□ -0.73
PTCD3-201ENST00000254630 GNAI2P04899 355 aa10.48□□□□□ -0.73
PTCD3-201ENST00000254630 SETQ01105 290 aaPredicted RBP10.48□□□□□ -0.73
PTCD3-201ENST00000254630 CCDC158Q5M9N0 1113 aa10.48□□□□□ -0.73
PTCD3-201ENST00000254630 GNL3LQ9NVN8 582 aaKnown RBP10.47□□□□□ -0.73
PTCD3-201ENST00000254630 EXOSC9Q06265 439 aaKnown RBP10.47□□□□□ -0.73
PTCD3-201ENST00000254630 SF3B2Q13435 895 aaKnown RBP10.47□□□□□ -0.73
PTCD3-201ENST00000254630 C1orf115Q9H7X2 142 aa10.47□□□□□ -0.73
PTCD3-201ENST00000254630 CCDC141Q6ZP82 1450 aa10.47□□□□□ -0.73
PTCD3-201ENST00000254630 SURF6O75683 361 aaKnown RBP10.47□□□□□ -0.73
PTCD3-201ENST00000254630 RPGRIP1LQ68CZ1 1315 aa10.47□□□□□ -0.73
PTCD3-201ENST00000254630 NAP1L1P55209 391 aaKnown RBP10.46□□□□□ -0.73
PTCD3-201ENST00000254630 CLASRPQ8N2M8 674 aaKnown RBP10.46□□□□□ -0.73
PTCD3-201ENST00000254630 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.46□□□□□ -0.733e-7■■■□□ 18.5
PTCD3-201ENST00000254630 CABP1Q9NZU7 370 aa10.46□□□□□ -0.73
PTCD3-201ENST00000254630 ANKLE2Q86XL3 938 aa10.46□□□□□ -0.73
PTCD3-201ENST00000254630 HOMER1Q86YM7 354 aa10.46□□□□□ -0.74
PTCD3-201ENST00000254630 ARHGEF11O15085 1522 aa10.46□□□□□ -0.74
PTCD3-201ENST00000254630 NAT10Q9H0A0 1025 aaKnown RBP10.46□□□□□ -0.74
PTCD3-201ENST00000254630 CCT4P50991 539 aaKnown RBP10.45□□□□□ -0.74
PTCD3-201ENST00000254630 KRI1Q8N9T8 703 aaKnown RBP10.45□□□□□ -0.74
PTCD3-201ENST00000254630 DDX54Q8TDD1 881 aaKnown RBP10.45□□□□□ -0.74
PTCD3-201ENST00000254630 NBPF1Q3BBV0 1214 aa10.45□□□□□ -0.74
PTCD3-201ENST00000254630 SULT6B1Q6IMI4 303 aa10.45□□□□□ -0.74
PTCD3-201ENST00000254630 GCC1Q96CN9 775 aa10.45□□□□□ -0.74
PTCD3-201ENST00000254630 MYL6BP14649 208 aa10.45□□□□□ -0.74
PTCD3-201ENST00000254630 RRP12Q5JTH9 1297 aaKnown RBP10.45□□□□□ -0.74
PTCD3-201ENST00000254630 CDK5RAP3Q96JB5 506 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 PRXQ9BXM0 1461 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 TMEM132AQ24JP5 1023 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 ZNF530Q6P9A1 599 aaPredicted RBP10.44□□□□□ -0.74
PTCD3-201ENST00000254630 ATAD2Q6PL18 1390 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 SLC4A2P04920 1241 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 PIP4K2BP78356 416 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 CT47A1Q5JQC4 288 aaPredicted RBP10.44□□□□□ -0.74
PTCD3-201ENST00000254630 TSR2Q969E8 191 aaKnown RBP10.44□□□□□ -0.74
PTCD3-201ENST00000254630 MAGI1Q96QZ7 1491 aaPredicted RBP10.44□□□□□ -0.74
PTCD3-201ENST00000254630 FANCIQ9NVI1 1328 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 BTBD11A6QL63 1104 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 LETM1O95202 739 aaPredicted RBP10.44□□□□□ -0.74
PTCD3-201ENST00000254630 SLC52A1Q9NWF4 448 aa10.44□□□□□ -0.74
PTCD3-201ENST00000254630 HDGFL1Q5TGJ6 251 aa10.43□□□□□ -0.74
PTCD3-201ENST00000254630 MAP4K4O95819 1239 aaPredicted RBP10.43□□□□□ -0.74
PTCD3-201ENST00000254630 ODF2Q5BJF6 829 aa10.43□□□□□ -0.74
PTCD3-201ENST00000254630 PPP1R1BQ9UD71 204 aaPredicted RBP10.43□□□□□ -0.74
PTCD3-201ENST00000254630 NSD3Q9BZ95 1437 aa10.43□□□□□ -0.74
PTCD3-201ENST00000254630 KIAA0586Q9BVV6 1533 aa10.43□□□□□ -0.74
PTCD3-201ENST00000254630 PDZRN3Q9UPQ7 1066 aa10.43□□□□□ -0.74
PTCD3-201ENST00000254630 PDILTQ8N807 584 aa10.42□□□□□ -0.74
PTCD3-201ENST00000254630 LRRCC1Q9C099 1032 aa10.42□□□□□ -0.74
PTCD3-201ENST00000254630 SIL1Q9H173 461 aa10.42□□□□□ -0.74
PTCD3-201ENST00000254630 CDCA7LQ96GN5 454 aa10.42□□□□□ -0.74
PTCD3-201ENST00000254630 ZNF396Q96N95 335 aaPredicted RBP10.42□□□□□ -0.74
PTCD3-201ENST00000254630 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.42□□□□□ -0.741e-9■□□□□ 8.4
PTCD3-201ENST00000254630 R3HCC1Q9Y3T6 440 aaKnown RBP10.42□□□□□ -0.74
PTCD3-201ENST00000254630 WWC2Q6AWC2 1192 aa10.42□□□□□ -0.74
PTCD3-201ENST00000254630 ABCA10Q8WWZ4 1543 aa10.42□□□□□ -0.74
PTCD3-201ENST00000254630 SLC12A5Q9H2X9 1139 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 ANKRD30BQ9BXX2 1392 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 CCDC69A6NI79 296 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 RAPGEF3O95398 923 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 WDR63Q8IWG1 891 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 RRS1Q15050 365 aaKnown RBP10.41□□□□□ -0.74
PTCD3-201ENST00000254630 ZSCAN25Q6NSZ9 544 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 STK11IPQ8N1F8 1099 aa10.41□□□□□ -0.74
PTCD3-201ENST00000254630 MAGEC2Q9UBF1 373 aaPredicted RBP10.41□□□□□ -0.74
PTCD3-201ENST00000254630 CCAR1Q8IX12 1150 aaKnown RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms