RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 BECN1Q14457 450 aa24.18■■□□□ 1.46
SNX4-201ENST00000251775 PANK1Q8TE04 598 aa24.18■■□□□ 1.46
SNX4-201ENST00000251775 STAG3Q9UJ98 1225 aa24.18■■□□□ 1.46
SNX4-201ENST00000251775 RARSP54136 660 aaKnown RBP24.17■■□□□ 1.46
SNX4-201ENST00000251775 FYB1O15117 783 aa24.17■■□□□ 1.46
SNX4-201ENST00000251775 AGLP35573 1532 aa24.17■■□□□ 1.46
SNX4-201ENST00000251775 TERF2IPQ9NYB0 399 aa24.16■■□□□ 1.46
SNX4-201ENST00000251775 CANXP27824 592 aaKnown RBP24.16■■□□□ 1.46
SNX4-201ENST00000251775 SLKQ9H2G2 1235 aaPredicted RBP24.16■■□□□ 1.46
SNX4-201ENST00000251775 COG6Q9Y2V7 657 aa24.16■■□□□ 1.46
SNX4-201ENST00000251775 CLUAP1Q96AJ1 413 aa24.15■■□□□ 1.46
SNX4-201ENST00000251775 ANTXR1Q9H6X2 564 aa24.15■■□□□ 1.46
SNX4-201ENST00000251775 COL3A1P02461 1466 aaPredicted RBP24.15■■□□□ 1.46
SNX4-201ENST00000251775 CDK19Q9BWU1 502 aa24.14■■□□□ 1.46
SNX4-201ENST00000251775 ARHGEF40Q8TER5 1519 aa24.14■■□□□ 1.45
SNX4-201ENST00000251775 NCBP3Q53F19 620 aaKnown RBP24.14■■□□□ 1.45
SNX4-201ENST00000251775 A2ML1A8K2U0 1454 aa24.12■■□□□ 1.45
SNX4-201ENST00000251775 MED14O60244 1454 aa24.12■■□□□ 1.45
SNX4-201ENST00000251775 RRAGDQ9NQL2 400 aaPredicted RBP24.12■■□□□ 1.45
SNX4-201ENST00000251775 PPP6R1Q9UPN7 881 aa24.12■■□□□ 1.45
SNX4-201ENST00000251775 SPATA31D1Q6ZQQ2 1576 aa24.11■■□□□ 1.45
SNX4-201ENST00000251775 U2SURPO15042 1029 aaKnown RBP24.11■■□□□ 1.45
SNX4-201ENST00000251775 PLEKHF1Q96S99 279 aa24.11■■□□□ 1.45
SNX4-201ENST00000251775 SETD1AO15047 1707 aaKnown RBP24.1■■□□□ 1.45
SNX4-201ENST00000251775 L1TD1Q5T7N2 865 aaKnown RBP24.1■■□□□ 1.45
SNX4-201ENST00000251775 BCL2L13Q9BXK5 485 aa24.1■■□□□ 1.45
SNX4-201ENST00000251775 CABP1Q9NZU7 370 aa24.1■■□□□ 1.45
SNX4-201ENST00000251775 TNNQ9UQP3 1299 aa24.1■■□□□ 1.45
SNX4-201ENST00000251775 KIF20BQ96Q89 1820 aa24.09■■□□□ 1.45
SNX4-201ENST00000251775 HDGFL2Q7Z4V5 671 aaPredicted RBP24.09■■□□□ 1.45
SNX4-201ENST00000251775 MYH16Q9H6N6 1097 aa24.09■■□□□ 1.45
SNX4-201ENST00000251775 MLECQ14165 292 aa24.08■■□□□ 1.45
SNX4-201ENST00000251775 RIMS2Q9UQ26 1411 aa24.07■■□□□ 1.44
SNX4-201ENST00000251775 RLBP1P12271 317 aa24.07■■□□□ 1.44
SNX4-201ENST00000251775 WAPLQ7Z5K2 1190 aa24.07■■□□□ 1.44
SNX4-201ENST00000251775 DLC1Q96QB1 1528 aa24.06■■□□□ 1.44
SNX4-201ENST00000251775 TMPOP42166 694 aaKnown RBP24.05■■□□□ 1.44
SNX4-201ENST00000251775 TBC1D32Q96NH3 1257 aa24.05■■□□□ 1.44
SNX4-201ENST00000251775 TBC1D2Q9BYX2 928 aa24.04■■□□□ 1.44
SNX4-201ENST00000251775 TRIM35Q9UPQ4 493 aa24.04■■□□□ 1.44
SNX4-201ENST00000251775 TSR2Q969E8 191 aaKnown RBP24.03■■□□□ 1.44
SNX4-201ENST00000251775 PNPLA6Q8IY17 1366 aa24.02■■□□□ 1.44
SNX4-201ENST00000251775 ZMYM3Q14202 1370 aa24.02■■□□□ 1.44
SNX4-201ENST00000251775 UPF2Q9HAU5 1272 aaKnown RBP24.01■■□□□ 1.43
SNX4-201ENST00000251775 NRXN3Q9Y4C0 1643 aa24.01■■□□□ 1.43
SNX4-201ENST00000251775 DIAPH1O60610 1272 aaKnown RBP24.01■■□□□ 1.43
SNX4-201ENST00000251775 PMFBP1Q8TBY8 1022 aa24.01■■□□□ 1.43
SNX4-201ENST00000251775 PCDHB15Q9Y5E8 787 aa24■■□□□ 1.43
SNX4-201ENST00000251775 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.99■■□□□ 1.43
SNX4-201ENST00000251775 ATP7BP35670 1465 aa23.98■■□□□ 1.43
SNX4-201ENST00000251775 XRCC6P12956 609 aaKnown RBP eCLIP23.98■■□□□ 1.43
SNX4-201ENST00000251775 FBLN1P23142 703 aa23.98■■□□□ 1.43
SNX4-201ENST00000251775 EXOSC9Q06265 439 aaKnown RBP23.98■■□□□ 1.43
SNX4-201ENST00000251775 FSD2A1L4K1 749 aa23.98■■□□□ 1.43
SNX4-201ENST00000251775 PDZRN3Q9UPQ7 1066 aa23.98■■□□□ 1.43
SNX4-201ENST00000251775 AAMPQ13685 434 aa23.97■■□□□ 1.43
SNX4-201ENST00000251775 MAP2P11137 1827 aaKnown RBP23.96■■□□□ 1.43
SNX4-201ENST00000251775 CT47B1P0C2W7 299 aaPredicted RBP23.95■■□□□ 1.43
SNX4-201ENST00000251775 RIPK4P57078 832 aa23.95■■□□□ 1.43
SNX4-201ENST00000251775 METP08581 1390 aa23.95■■□□□ 1.42
SNX4-201ENST00000251775 POLKQ9UBT6 870 aa23.94■■□□□ 1.42
SNX4-201ENST00000251775 GOLGA6L3A6NEY3 463 aa23.94■■□□□ 1.42
SNX4-201ENST00000251775 ZKSCAN2Q63HK3 967 aa23.94■■□□□ 1.42
SNX4-201ENST00000251775 KIF13AQ9H1H9 1805 aa23.94■■□□□ 1.42
SNX4-201ENST00000251775 CDC42BPGQ6DT37 1551 aa23.94■■□□□ 1.42
SNX4-201ENST00000251775 MCM4P33991 863 aa23.93■■□□□ 1.42
SNX4-201ENST00000251775 ARXQ96QS3 562 aa23.93■■□□□ 1.42
SNX4-201ENST00000251775 IL16Q14005 1332 aa23.93■■□□□ 1.42
SNX4-201ENST00000251775 LRRC7Q96NW7 1537 aa23.93■■□□□ 1.42
SNX4-201ENST00000251775 MVPQ14764 893 aaKnown RBP23.92■■□□□ 1.42
SNX4-201ENST00000251775 WASLO00401 505 aaPredicted RBP23.91■■□□□ 1.42
SNX4-201ENST00000251775 SMC4Q9NTJ3 1288 aa23.91■■□□□ 1.42
SNX4-201ENST00000251775 DZIP1LQ8IYY4 767 aaKnown RBP23.91■■□□□ 1.42
SNX4-201ENST00000251775 CPSF1Q10570 1443 aaKnown RBP23.91■■□□□ 1.42
SNX4-201ENST00000251775 SPRYD3Q8NCJ5 442 aa23.9■■□□□ 1.42
SNX4-201ENST00000251775 SSH1Q8WYL5 1049 aa23.9■■□□□ 1.42
SNX4-201ENST00000251775 PANK2Q9BZ23 570 aa23.9■■□□□ 1.42
SNX4-201ENST00000251775 PNNQ9H307 717 aaKnown RBP23.9■■□□□ 1.42
SNX4-201ENST00000251775 FCHSD2O94868 740 aa23.9■■□□□ 1.42
SNX4-201ENST00000251775 TXNDC2Q86VQ3 553 aa23.9■■□□□ 1.42
SNX4-201ENST00000251775 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.9■■□□□ 1.42
SNX4-201ENST00000251775 PPIP5K1Q6PFW1 1433 aa23.9■■□□□ 1.42
SNX4-201ENST00000251775 GZF1Q9H116 711 aaPredicted RBP23.88■■□□□ 1.41
SNX4-201ENST00000251775 PRKAR2BP31323 418 aa23.88■■□□□ 1.41
SNX4-201ENST00000251775 FTSJ3Q8IY81 847 aaKnown RBP23.88■■□□□ 1.41
SNX4-201ENST00000251775 FAM135BQ49AJ0 1406 aa23.88■■□□□ 1.41
SNX4-201ENST00000251775 RWDD1Q9H446 243 aaPredicted RBP23.87■■□□□ 1.41
SNX4-201ENST00000251775 TRIM27P14373 513 aa23.87■■□□□ 1.41
SNX4-201ENST00000251775 NME9Q86XW9 330 aa23.87■■□□□ 1.41
SNX4-201ENST00000251775 ESF1Q9H501 851 aaKnown RBP23.87■■□□□ 1.41
SNX4-201ENST00000251775 EDC4Q6P2E9 1401 aaKnown RBP23.87■■□□□ 1.41
SNX4-201ENST00000251775 KNDC1Q76NI1 1749 aa23.87■■□□□ 1.41
SNX4-201ENST00000251775 CLCN1P35523 988 aa23.86■■□□□ 1.41
SNX4-201ENST00000251775 NCKAP5LQ9HCH0 1330 aa23.86■■□□□ 1.41
SNX4-201ENST00000251775 ZRANB1Q9UGI0 708 aa23.86■■□□□ 1.41
SNX4-201ENST00000251775 EMILIN1Q9Y6C2 1016 aa23.85■■□□□ 1.41
SNX4-201ENST00000251775 CHMP5Q9NZZ3 219 aa23.85■■□□□ 1.41
SNX4-201ENST00000251775 NUDT16Q96DE0 195 aaKnown RBP23.84■■□□□ 1.41
SNX4-201ENST00000251775 TRAK2O60296 914 aa23.84■■□□□ 1.41
SNX4-201ENST00000251775 HMOX1P09601 288 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms