RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 CENPBP07199 599 aaPredicted RBP18.14■□□□□ 0.49
SLIRP-201ENST00000238688 UPF1Q92900 1129 aaKnown RBP eCLIP18.14■□□□□ 0.49
SLIRP-201ENST00000238688 TNS3Q68CZ2 1445 aa18.14■□□□□ 0.49
SLIRP-201ENST00000238688 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.13■□□□□ 0.49
SLIRP-201ENST00000238688 WASLO00401 505 aaPredicted RBP18.13■□□□□ 0.49
SLIRP-201ENST00000238688 PMFBP1Q8TBY8 1022 aa18.13■□□□□ 0.49
SLIRP-201ENST00000238688 SBNO1A3KN83 1393 aa18.13■□□□□ 0.49
SLIRP-201ENST00000238688 ALS2Q96Q42 1657 aa18.12■□□□□ 0.49
SLIRP-201ENST00000238688 PUS7Q96PZ0 661 aaKnown RBP18.11■□□□□ 0.49
SLIRP-201ENST00000238688 QRICH2Q9H0J4 1663 aa18.1■□□□□ 0.49
SLIRP-201ENST00000238688 SLIT2O94813 1529 aa18.1■□□□□ 0.49
SLIRP-201ENST00000238688 TRPC5Q9UL62 973 aaPredicted RBP18.1■□□□□ 0.49
SLIRP-201ENST00000238688 ATP7BP35670 1465 aa18.09■□□□□ 0.49
SLIRP-201ENST00000238688 PSME1Q06323 249 aa18.09■□□□□ 0.49
SLIRP-201ENST00000238688 CABLES1Q8TDN4 633 aa18.09■□□□□ 0.49
SLIRP-201ENST00000238688 ITSN1Q15811 1721 aa18.09■□□□□ 0.49
SLIRP-201ENST00000238688 CRYBG1Q9Y4K1 1723 aa18.08■□□□□ 0.48
SLIRP-201ENST00000238688 PLCH1Q4KWH8 1693 aa18.07■□□□□ 0.48
SLIRP-201ENST00000238688 TOPAZ1Q8N9V7 1692 aa18.07■□□□□ 0.48
SLIRP-201ENST00000238688 CENPJQ9HC77 1338 aaPredicted RBP18.06■□□□□ 0.48
SLIRP-201ENST00000238688 GLI3P10071 1580 aa18.06■□□□□ 0.48
SLIRP-201ENST00000238688 NWD2Q9ULI1 1742 aa18.05■□□□□ 0.48
SLIRP-201ENST00000238688 ARHGEF10O15013 1369 aa18.04■□□□□ 0.48
SLIRP-201ENST00000238688 NUDT16Q96DE0 195 aaKnown RBP18.04■□□□□ 0.48
SLIRP-201ENST00000238688 CDK19Q9BWU1 502 aa18.04■□□□□ 0.48
SLIRP-201ENST00000238688 PRKRIP1Q9H875 184 aaPredicted RBP18.04■□□□□ 0.48
SLIRP-201ENST00000238688 UNC5CLQ8IV45 518 aa18.03■□□□□ 0.48
SLIRP-201ENST00000238688 GJD4Q96KN9 370 aaPredicted RBP18.03■□□□□ 0.48
SLIRP-201ENST00000238688 MYOM1P52179 1685 aa18.03■□□□□ 0.48
SLIRP-201ENST00000238688 BRWD3Q6RI45 1802 aa18.02■□□□□ 0.48
SLIRP-201ENST00000238688 NINLQ9Y2I6 1382 aa18.02■□□□□ 0.47
SLIRP-201ENST00000238688 NRAPQ86VF7 1730 aa18.01■□□□□ 0.47
SLIRP-201ENST00000238688 PLEKHG5O94827 1062 aa18.01■□□□□ 0.47
SLIRP-201ENST00000238688 RALBP1Q15311 655 aa18.01■□□□□ 0.47
SLIRP-201ENST00000238688 LMOD2Q6P5Q4 547 aa18.01■□□□□ 0.47
SLIRP-201ENST00000238688 NPC1L1Q9UHC9 1359 aa18.01■□□□□ 0.47
SLIRP-201ENST00000238688 FAM83GA6ND36 823 aa18■□□□□ 0.47
SLIRP-201ENST00000238688 NGDNQ8NEJ9 315 aaKnown RBP17.99■□□□□ 0.47
SLIRP-201ENST00000238688 POLR3AO14802 1390 aaPredicted RBP17.99■□□□□ 0.47
SLIRP-201ENST00000238688 PLEKHG3A1L390 1219 aa17.97■□□□□ 0.47
SLIRP-201ENST00000238688 CCDC61Q9Y6R9 512 aa17.97■□□□□ 0.47
SLIRP-201ENST00000238688 COL14A1Q05707 1796 aaKnown RBP17.96■□□□□ 0.47
SLIRP-201ENST00000238688 HAP1P54257 671 aaPredicted RBP17.96■□□□□ 0.47
SLIRP-201ENST00000238688 VPS72Q15906 364 aa17.96■□□□□ 0.47
SLIRP-201ENST00000238688 PHRF1Q9P1Y6 1649 aaKnown RBP17.96■□□□□ 0.47
SLIRP-201ENST00000238688 ACEP12821 1306 aa17.96■□□□□ 0.46
SLIRP-201ENST00000238688 EVC2Q86UK5 1308 aa17.96■□□□□ 0.46
SLIRP-201ENST00000238688 EP400Q96L91 3159 aa17.95■□□□□ 0.46
SLIRP-201ENST00000238688 ATAD2Q6PL18 1390 aa17.95■□□□□ 0.46
SLIRP-201ENST00000238688 PER1O15534 1290 aaPredicted RBP17.94■□□□□ 0.46
SLIRP-201ENST00000238688 POLR3GLQ9BT43 218 aa17.94■□□□□ 0.46
SLIRP-201ENST00000238688 PARD3Q8TEW0 1356 aa17.93■□□□□ 0.46
SLIRP-201ENST00000238688 ONECUT3O60422 494 aaPredicted RBP17.93■□□□□ 0.46
SLIRP-201ENST00000238688 PAK3O75914 559 aaPredicted RBP17.93■□□□□ 0.46
SLIRP-201ENST00000238688 CABP2Q9NPB3 220 aa17.93■□□□□ 0.46
SLIRP-201ENST00000238688 BRD4O60885 1362 aaPredicted RBP17.91■□□□□ 0.46
SLIRP-201ENST00000238688 MYBBP1AQ9BQG0 1328 aaKnown RBP17.91■□□□□ 0.46
SLIRP-201ENST00000238688 PPIP5K1Q6PFW1 1433 aa17.9■□□□□ 0.46
SLIRP-201ENST00000238688 BTG4Q9NY30 223 aa17.9■□□□□ 0.46
SLIRP-201ENST00000238688 SRPK2P78362 688 aaKnown RBP17.89■□□□□ 0.45
SLIRP-201ENST00000238688 SEPT12Q8IYM1 358 aa17.89■□□□□ 0.45
SLIRP-201ENST00000238688 INSRP06213 1382 aa17.89■□□□□ 0.45
SLIRP-201ENST00000238688 NRKQ7Z2Y5 1582 aa17.88■□□□□ 0.45
SLIRP-201ENST00000238688 NUTM2GQ5VZR2 741 aa17.88■□□□□ 0.45
SLIRP-201ENST00000238688 PANK3Q9H999 370 aa17.88■□□□□ 0.45
SLIRP-201ENST00000238688 KNSTRNQ9Y448 316 aa17.88■□□□□ 0.45
SLIRP-201ENST00000238688 KIAA0232Q92628 1395 aa17.88■□□□□ 0.45
SLIRP-201ENST00000238688 NLRP13Q86W25 1043 aa17.86■□□□□ 0.45
SLIRP-201ENST00000238688 CABP1Q9NZU7 370 aa17.86■□□□□ 0.45
SLIRP-201ENST00000238688 USP19O94966 1318 aa17.86■□□□□ 0.45
SLIRP-201ENST00000238688 SSH2Q76I76 1423 aa17.86■□□□□ 0.45
SLIRP-201ENST00000238688 AKAP12Q02952 1782 aa17.86■□□□□ 0.45
SLIRP-201ENST00000238688 NSD2O96028 1365 aa17.85■□□□□ 0.45
SLIRP-201ENST00000238688 SPATA31A5Q5VU36 1347 aa17.85■□□□□ 0.45
SLIRP-201ENST00000238688 SPATA31A7Q8IWB4 1347 aa17.85■□□□□ 0.45
SLIRP-201ENST00000238688 PRDM11Q9NQV5 511 aa17.85■□□□□ 0.45
SLIRP-201ENST00000238688 LMO7Q8WWI1 1683 aa17.84■□□□□ 0.45
SLIRP-201ENST00000238688 THSD7AQ9UPZ6 1657 aa17.84■□□□□ 0.45
SLIRP-201ENST00000238688 USP6P35125 1406 aa17.84■□□□□ 0.45
SLIRP-201ENST00000238688 CHRNA2Q15822 529 aa17.84■□□□□ 0.45
SLIRP-201ENST00000238688 ABTB2Q8N961 1025 aa17.84■□□□□ 0.45
SLIRP-201ENST00000238688 MRS2Q9HD23 443 aa17.84■□□□□ 0.45
SLIRP-201ENST00000238688 CCDC9Q9Y3X0 531 aaKnown RBP17.84■□□□□ 0.45
SLIRP-201ENST00000238688 ANKRD36BQ8N2N9 1353 aa17.83■□□□□ 0.45
SLIRP-201ENST00000238688 ZC3H6P61129 1189 aaKnown RBP17.83■□□□□ 0.44
SLIRP-201ENST00000238688 CAMTA1Q9Y6Y1 1673 aa17.83■□□□□ 0.44
SLIRP-201ENST00000238688 YTHDC1Q96MU7 727 aaKnown RBP17.82■□□□□ 0.44
SLIRP-201ENST00000238688 PIK3C2AO00443 1686 aa17.82■□□□□ 0.44
SLIRP-201ENST00000238688 CPDO75976 1380 aa17.81■□□□□ 0.44
SLIRP-201ENST00000238688 FAM98CQ17RN3 349 aaKnown RBP17.81■□□□□ 0.44
SLIRP-201ENST00000238688 AMER1Q5JTC6 1135 aaPredicted RBP17.81■□□□□ 0.44
SLIRP-201ENST00000238688 CCDC125Q86Z20 511 aa17.81■□□□□ 0.44
SLIRP-201ENST00000238688 KRT27Q7Z3Y8 459 aa17.8■□□□□ 0.44
SLIRP-201ENST00000238688 SLIT3O75094 1523 aa17.8■□□□□ 0.44
SLIRP-201ENST00000238688 BLMP54132 1417 aaPredicted RBP17.8■□□□□ 0.44
SLIRP-201ENST00000238688 COL18A1P39060 1754 aa17.79■□□□□ 0.44
SLIRP-201ENST00000238688 SPATA31A1Q5TZJ5 1347 aa17.79■□□□□ 0.44
SLIRP-201ENST00000238688 GCP02774 474 aa17.78■□□□□ 0.44
SLIRP-201ENST00000238688 CPSF1Q10570 1443 aaKnown RBP17.78■□□□□ 0.44
SLIRP-201ENST00000238688 MON2Q7Z3U7 1717 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms