RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 TWISTNBQ3B726 338 aaPredicted RBP22.83■■□□□ 1.25
SMPD3-201ENST00000219334 IFT140Q96RY7 1462 aa22.83■■□□□ 1.24
SMPD3-201ENST00000219334 NUCB2P80303 420 aa22.82■■□□□ 1.24
SMPD3-201ENST00000219334 CCDC158Q5M9N0 1113 aa22.82■■□□□ 1.24
SMPD3-201ENST00000219334 SASS6Q6UVJ0 657 aa22.82■■□□□ 1.24
SMPD3-201ENST00000219334 CHMP5Q9NZZ3 219 aa22.81■■□□□ 1.24
SMPD3-201ENST00000219334 HIP1O00291 1037 aa22.8■■□□□ 1.24
SMPD3-201ENST00000219334 CT47A1Q5JQC4 288 aaPredicted RBP22.8■■□□□ 1.24
SMPD3-201ENST00000219334 BRD4O60885 1362 aaPredicted RBP22.8■■□□□ 1.24
SMPD3-201ENST00000219334 SLC12A5Q9H2X9 1139 aa22.8■■□□□ 1.24
SMPD3-201ENST00000219334 HMGB2P26583 209 aaKnown RBP22.79■■□□□ 1.24
SMPD3-201ENST00000219334 PPP2R1AP30153 589 aa22.79■■□□□ 1.24
SMPD3-201ENST00000219334 TTC39AQ5SRH9 613 aa22.79■■□□□ 1.24
SMPD3-201ENST00000219334 RTEL1-TNFRSF6BF6WH68 1400 aa22.79■■□□□ 1.24
SMPD3-201ENST00000219334 EXOSC9Q06265 439 aaKnown RBP22.78■■□□□ 1.24
SMPD3-201ENST00000219334 GNAI2P04899 355 aa22.78■■□□□ 1.24
SMPD3-201ENST00000219334 C22orf23Q9BZE7 217 aa22.77■■□□□ 1.24
SMPD3-201ENST00000219334 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.77■■□□□ 1.24
SMPD3-201ENST00000219334 C9orf84Q5VXU9 1444 aa22.77■■□□□ 1.24
SMPD3-201ENST00000219334 ODF2Q5BJF6 829 aa22.77■■□□□ 1.24
SMPD3-201ENST00000219334 SLC4A2P04920 1241 aa22.76■■□□□ 1.23
SMPD3-201ENST00000219334 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.76■■□□□ 1.23
SMPD3-201ENST00000219334 GPS2Q13227 327 aa22.76■■□□□ 1.23
SMPD3-201ENST00000219334 RRP12Q5JTH9 1297 aaKnown RBP22.76■■□□□ 1.23
SMPD3-201ENST00000219334 MPHOSPH8Q99549 860 aa22.76■■□□□ 1.23
SMPD3-201ENST00000219334 EPS15P42566 896 aa22.75■■□□□ 1.23
SMPD3-201ENST00000219334 RPGRIP1LQ68CZ1 1315 aa22.75■■□□□ 1.23
SMPD3-201ENST00000219334 TNNT3P45378 269 aaPredicted RBP22.75■■□□□ 1.23
SMPD3-201ENST00000219334 NBPF1Q3BBV0 1214 aa22.75■■□□□ 1.23
SMPD3-201ENST00000219334 OFD1O75665 1012 aa22.75■■□□□ 1.23
SMPD3-201ENST00000219334 TMEM132AQ24JP5 1023 aa22.75■■□□□ 1.23
SMPD3-201ENST00000219334 HOMER1Q86YM7 354 aa22.75■■□□□ 1.23
SMPD3-201ENST00000219334 ZNF592Q92610 1267 aa22.74■■□□□ 1.23
SMPD3-201ENST00000219334 WWC2Q6AWC2 1192 aa22.74■■□□□ 1.23
SMPD3-201ENST00000219334 KIF21BO75037 1637 aa22.73■■□□□ 1.23
SMPD3-201ENST00000219334 NAP1L1P55209 391 aaKnown RBP22.73■■□□□ 1.23
SMPD3-201ENST00000219334 OLFM4Q6UX06 510 aa22.73■■□□□ 1.23
SMPD3-201ENST00000219334 ATP2B2Q01814 1243 aa22.73■■□□□ 1.23
SMPD3-201ENST00000219334 SRCIN1Q9C0H9 1055 aa22.73■■□□□ 1.23
SMPD3-201ENST00000219334 NACAP1Q9BZK3 213 aa22.72■■□□□ 1.23
SMPD3-201ENST00000219334 SDF4Q9BRK5 362 aa22.72■■□□□ 1.23
SMPD3-201ENST00000219334 KDM4AO75164 1064 aa22.71■■□□□ 1.23
SMPD3-201ENST00000219334 CCT4P50991 539 aaKnown RBP22.71■■□□□ 1.23
SMPD3-201ENST00000219334 CCDC57Q2TAC2 916 aa22.71■■□□□ 1.23
SMPD3-201ENST00000219334 ATP2B1P20020 1258 aa22.71■■□□□ 1.23
SMPD3-201ENST00000219334 CDK5RAP3Q96JB5 506 aa22.71■■□□□ 1.23
SMPD3-201ENST00000219334 MYL6BP14649 208 aa22.71■■□□□ 1.23
SMPD3-201ENST00000219334 CFTRP13569 1480 aa22.7■■□□□ 1.22
SMPD3-201ENST00000219334 RBM5P52756 815 aaKnown RBP eCLIP22.7■■□□□ 1.22
SMPD3-201ENST00000219334 XPCQ01831 940 aaPredicted RBP22.69■■□□□ 1.22
SMPD3-201ENST00000219334 TROQ12816 1431 aaPredicted RBP22.69■■□□□ 1.22
SMPD3-201ENST00000219334 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.69■■□□□ 1.22
SMPD3-201ENST00000219334 NAT10Q9H0A0 1025 aaKnown RBP22.69■■□□□ 1.22
SMPD3-201ENST00000219334 ZC3H6P61129 1189 aaKnown RBP22.68■■□□□ 1.22
SMPD3-201ENST00000219334 TXLNAP40222 546 aa22.68■■□□□ 1.22
SMPD3-201ENST00000219334 ATAD2Q6PL18 1390 aa22.68■■□□□ 1.22
SMPD3-201ENST00000219334 NESP48681 1621 aa22.68■■□□□ 1.22
SMPD3-201ENST00000219334 ZFYVE27Q5T4F4 411 aa22.67■■□□□ 1.22
SMPD3-201ENST00000219334 GCC1Q96CN9 775 aa22.67■■□□□ 1.22
SMPD3-201ENST00000219334 KIAA1107Q9UPP5 1409 aa22.66■■□□□ 1.22
SMPD3-201ENST00000219334 SIL1Q9H173 461 aa22.66■■□□□ 1.22
SMPD3-201ENST00000219334 ANKRD30BQ9BXX2 1392 aa22.66■■□□□ 1.22
SMPD3-201ENST00000219334 KCNH5Q8NCM2 988 aa22.66■■□□□ 1.22
SMPD3-201ENST00000219334 PDCP20941 246 aa22.66■■□□□ 1.22
SMPD3-201ENST00000219334 ZSCAN25Q6NSZ9 544 aa22.65■■□□□ 1.22
SMPD3-201ENST00000219334 ERBINQ96RT1 1412 aa22.65■■□□□ 1.22
SMPD3-201ENST00000219334 SNAPC4Q5SXM2 1469 aa22.65■■□□□ 1.22
SMPD3-201ENST00000219334 BTBD11A6QL63 1104 aa22.65■■□□□ 1.22
SMPD3-201ENST00000219334 TSR2Q969E8 191 aaKnown RBP22.65■■□□□ 1.22
SMPD3-201ENST00000219334 GSE1Q14687 1217 aa22.65■■□□□ 1.22
SMPD3-201ENST00000219334 NOB1Q9ULX3 412 aaKnown RBP22.65■■□□□ 1.22
SMPD3-201ENST00000219334 KRT18P05783 430 aaKnown RBP22.64■■□□□ 1.22
SMPD3-201ENST00000219334 C1orf115Q9H7X2 142 aa22.64■■□□□ 1.21
SMPD3-201ENST00000219334 CCDC61Q9Y6R9 512 aa22.63■■□□□ 1.21
SMPD3-201ENST00000219334 STARD3NLO95772 234 aa22.63■■□□□ 1.21
SMPD3-201ENST00000219334 NEK4P51957 841 aa22.63■■□□□ 1.21
SMPD3-201ENST00000219334 RRS1Q15050 365 aaKnown RBP22.63■■□□□ 1.21
SMPD3-201ENST00000219334 CEP126Q9P2H0 1117 aa22.63■■□□□ 1.21
SMPD3-201ENST00000219334 MCM2P49736 904 aa22.62■■□□□ 1.21
SMPD3-201ENST00000219334 BICDL1Q6ZP65 573 aa22.62■■□□□ 1.21
SMPD3-201ENST00000219334 ZSCAN29Q8IWY8 852 aaPredicted RBP22.62■■□□□ 1.21
SMPD3-201ENST00000219334 LRRCC1Q9C099 1032 aa22.62■■□□□ 1.21
SMPD3-201ENST00000219334 TRIM22Q8IYM9 498 aa22.61■■□□□ 1.21
SMPD3-201ENST00000219334 NUDT16Q96DE0 195 aaKnown RBP22.61■■□□□ 1.21
SMPD3-201ENST00000219334 CDCA7LQ96GN5 454 aa22.61■■□□□ 1.21
SMPD3-201ENST00000219334 CT47B1P0C2W7 299 aaPredicted RBP22.6■■□□□ 1.21
SMPD3-201ENST00000219334 PDE3AQ14432 1141 aa22.6■■□□□ 1.21
SMPD3-201ENST00000219334 FBXO3Q9UK99 471 aa22.6■■□□□ 1.21
SMPD3-201ENST00000219334 EHBP1L1Q8N3D4 1523 aa22.6■■□□□ 1.21
SMPD3-201ENST00000219334 KINO60870 393 aaKnown RBP22.59■■□□□ 1.21
SMPD3-201ENST00000219334 IGHMBP2P38935 993 aaKnown RBP22.59■■□□□ 1.21
SMPD3-201ENST00000219334 CCDC173Q0VFZ6 552 aa22.59■■□□□ 1.21
SMPD3-201ENST00000219334 ZNF428Q96B54 188 aa22.59■■□□□ 1.21
SMPD3-201ENST00000219334 PAF1Q8N7H5 531 aa22.59■■□□□ 1.21
SMPD3-201ENST00000219334 EFCAB5A4FU69 1503 aa22.59■■□□□ 1.21
SMPD3-201ENST00000219334 ZNF396Q96N95 335 aaPredicted RBP22.59■■□□□ 1.21
SMPD3-201ENST00000219334 SOGA3Q5TF21 947 aa22.59■■□□□ 1.21
SMPD3-201ENST00000219334 WDR63Q8IWG1 891 aa22.58■■□□□ 1.21
SMPD3-201ENST00000219334 FKBP4Q02790 459 aaKnown RBP eCLIP22.58■■□□□ 1.21
SMPD3-201ENST00000219334 PDILTQ8N807 584 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms