RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 A0A1W2PR77 199 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 TARSL2A2RTX5 802 aaKnown RBP20.09■□□□□ 0.81
CLN3-262ENST00000637699 M0QYV0 167 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 ZIC2O95409 532 aaPredicted RBP20.09■□□□□ 0.81
CLN3-262ENST00000637699 CALCAP01258 141 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 PAEPP09466 180 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 TBXAS1P24557 533 aaPredicted RBP20.09■□□□□ 0.81
CLN3-262ENST00000637699 PRCPP42785 496 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 TARDBPQ13148 414 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-262ENST00000637699 ARID5BQ14865 1188 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 DCAF6Q58WW2 860 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 MS4A13Q5J8X5 152 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 STK40Q8N2I9 435 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 AADATQ8N5Z0 425 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 KDM1BQ8NB78 822 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 OR14C36Q8NHC7 312 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 SERAC1Q96JX3 654 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 FCRL2Q96LA5 508 aaPredicted RBP20.09■□□□□ 0.81
CLN3-262ENST00000637699 FAM129BQ96TA1 746 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 TSG101Q99816 390 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 ZSWIM1Q9BR11 485 aa20.09■□□□□ 0.81
CLN3-262ENST00000637699 COL5A1P20908 1838 aaPredicted RBP20.09■□□□□ 0.81
CLN3-262ENST00000637699 SETXQ7Z333 2677 aaKnown RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 EDDM13A0A1B0GTR0 161 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 RNF225M0QZC1 329 aaPredicted RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 SLC16A3O15427 465 aaKnown RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 MOCS2O96007 188 aaPredicted RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 PRB1P04280 392 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 SRPRAP08240 638 aaKnown RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 C1SP09871 688 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 GOT1P17174 413 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 BRD2P25440 801 aaKnown RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 ARRB1P49407 418 aaPredicted RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 ACADVLP49748 655 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 NUMBP49757 651 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 CCR5P51681 352 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 ECT2LQ008S8 904 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 BNIP3Q12983 259 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 CNGA2Q16280 664 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 HES3Q5TGS1 186 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 ANKRD40Q6AI12 368 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 SND1Q7KZF4 910 aaKnown RBP eCLIP20.08■□□□□ 0.811e-7■■■□□ 15.8
CLN3-262ENST00000637699 ADAM32Q8TC27 787 aa20.08■□□□□ 0.81
CLN3-262ENST00000637699 DQX1Q8TE96 717 aaKnown RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 RPL10LQ96L21 214 aaKnown RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 UBL7Q96S82 380 aaPredicted RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 ARMCX3Q9UH62 379 aaPredicted RBP20.08■□□□□ 0.81
CLN3-262ENST00000637699 HELZ2Q9BYK8 2649 aaKnown RBP20.08■□□□□ 0.8
CLN3-262ENST00000637699 SHROOM3Q8TF72 1996 aa20.08■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3DA0A087WVF3 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3IA0A087WXS9 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3EA0A087X179 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3KA0A087X1G2 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3FA6NER0 549 aaPredicted RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3LB9A6J9 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TLR4O00206 839 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TLX3O43711 291 aaPredicted RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 KALRNO60229 2985 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 LUC7L3O95232 432 aaKnown RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 MOCS3O95396 460 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 FYNP06241 537 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3HP0C7X1 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 CDK4P11802 303 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 EPHA8P29322 1005 aaPredicted RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 EIF2S3P41091 472 aaKnown RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 PMS1P54277 932 aaKnown RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 ADPRHP54922 357 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 FKBP3Q00688 224 aaKnown RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 PNOCQ13519 176 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 RNF219Q5W0B1 726 aaPredicted RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3GQ6DHY5 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3CQ6IPX1 549 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 LRRC69Q6ZNQ3 347 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TBC1D3Q8IZP1 549 aaPredicted RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 APCDD1Q8J025 514 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 SLC35C1Q96A29 364 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 HSFY1Q96LI6 401 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 SERPINB11Q96P15 392 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 XPO7Q9UIA9 1087 aaKnown RBP20.07■□□□□ 0.8
CLN3-262ENST00000637699 NAALADL1Q9UQQ1 740 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 TLR6Q9Y2C9 796 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 ZDHHC9Q9Y397 364 aa20.07■□□□□ 0.8
CLN3-262ENST00000637699 A0A1W2PQ27 194 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 A0A1W2PQ64 194 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 YKT6O15498 198 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 FBXO21O94952 628 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 ADH1BP00325 375 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 IL1BP01584 269 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 C5AR1P21730 350 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 STK19P49842 368 aaPredicted RBP20.06■□□□□ 0.8
CLN3-262ENST00000637699 NXPH1P58417 271 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 SLC45A4Q5BKX6 768 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.06■□□□□ 0.8
CLN3-262ENST00000637699 LGI2Q8N0V4 545 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 TSC1Q92574 1164 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 PTPRN2Q92932 1015 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 KAT5Q92993 513 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 FAM149B1Q96BN6 582 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 SLC39A13Q96H72 371 aa20.06■□□□□ 0.8
CLN3-262ENST00000637699 NT5C1BQ96P26 610 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms