RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 WFDC5Q8TCV5 224 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 KCNV2Q8TDN2 545 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ACDQ96AP0 544 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ARHGEF26Q96DR7 871 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 MCEEQ96PE7 176 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 HHIPQ96QV1 700 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ACOX2Q99424 681 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 NUP85Q9BW27 656 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 TMPRSS4Q9NRS4 437 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ABCB8Q9NUT2 735 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ZSCAN32Q9NX65 697 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 IP6K2Q9UHH9 426 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 SALL4Q9UJQ4 1053 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 MMP17Q9ULZ9 603 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 GUCA1BQ9UMX6 200 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 JRKLQ9Y4A0 524 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 PAXBP1Q9Y5B6 917 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 SNX10Q9Y5X0 201 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 HS3ST4Q9Y661 456 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 MUC6Q6W4X9 2439 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 A0A0U1RQJ8 604 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 MACROD2A1Z1Q3 448 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 TMEM191CA6NGB0 347 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 MYO1FO00160 1098 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 ATMINO43313 823 aaPredicted RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 ADAM23O75077 832 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 LUC7L3O95232 432 aaKnown RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 PABPC1P11940 636 aaKnown RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 HNRNPLP14866 589 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLN3-261ENST00000637686 DESP17661 470 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 CD70P32970 193 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 PTPN9P43378 593 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 NOP2P46087 812 aaKnown RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 FNTBP49356 437 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 LMAN2Q12907 356 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 TUBB2AQ13885 445 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 PIGHQ14442 188 aaPredicted RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 HSF5Q4G112 596 aaPredicted RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 FSCBQ5H9T9 825 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 EOGTQ5NDL2 527 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 TMEM215Q68D42 235 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 RNF43Q68DV7 783 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 DCUN1D2Q6PH85 259 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 TMEM92Q6UXU6 159 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 CHST9Q7L1S5 443 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 STRADAQ7RTN6 431 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 CIR1Q86X95 450 aaPredicted RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 FIBINQ8TAL6 211 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 FAM172AQ8WUF8 416 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 ATRIPQ8WXE1 791 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 SORCS1Q8WY21 1168 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 CENPIQ92674 756 aaPredicted RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 NELL1Q92832 810 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 IGSF8Q969P0 613 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 FAM122AQ96E09 287 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 LMLNQ96KR4 655 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 TUBB2BQ9BVA1 445 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 FAM126AQ9BYI3 521 aaPredicted RBP10.17□□□□□ -0.78
CLN3-261ENST00000637686 CIPCQ9C0C6 399 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 ELOVL2Q9NXB9 296 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 TRIM10Q9UDY6 481 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 GGA2Q9UJY4 613 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 VANGL2Q9ULK5 521 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 DUSP10Q9Y6W6 482 aa10.17□□□□□ -0.78
CLN3-261ENST00000637686 MYO18AQ92614 2054 aaKnown RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 GRID2IPA4D2P6 1211 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 MIF4GDA9UHW6 222 aaKnown RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 H0Y626 953 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 TIMM44O43615 452 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 PROSCO94903 275 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 APBB3O95704 486 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 TNNT1P13805 278 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 PRLRP16471 622 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 NTSR1P30989 418 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 HOXA6P31267 233 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 NBL1P41271 181 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 IRAK1P51617 712 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 ZNF143P52747 638 aaPredicted RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 NAP1L1P55209 391 aaKnown RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 HDAC4P56524 1084 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 GNG11P61952 73 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 OGDHQ02218 1023 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 CDH18Q13634 790 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 CRY1Q16526 586 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 ZNF569Q5MCW4 686 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 RABGAP1LQ5R372 815 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 SDE2Q6IQ49 451 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 ZC3H14Q6PJT7 736 aaKnown RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 TRMT11Q7Z4G4 463 aaKnown RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 KIAA0907Q7Z7F0 614 aaPredicted RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 ADIPOR2Q86V24 386 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 LONP2Q86WA8 852 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 CCDC117Q8IWD4 279 aaPredicted RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 CHPFQ8IZ52 775 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 AHI1Q8N157 1196 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 C17orf53Q8N3J3 647 aaPredicted RBP10.16□□□□□ -0.78
CLN3-261ENST00000637686 CAMKK1Q8N5S9 505 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLN3-261ENST00000637686 ZBTB44Q8NCP5 570 aa10.16□□□□□ -0.78
CLN3-261ENST00000637686 TSTD1Q8NFU3 115 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms