RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 BPIFA3Q9BQP9 254 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 NUP58Q9BVL2 599 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 TKTL2Q9H0I9 626 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 HSD3B7Q9H2F3 369 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 PIGVQ9NUD9 493 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 SEPT11Q9NVA2 429 aaKnown RBP14.25□□□□□ -0.13
PNKP-228ENST00000637325 USP36Q9P275 1121 aaKnown RBP14.25□□□□□ -0.13
PNKP-228ENST00000637325 PILRBQ9UKJ0 227 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 INTS6Q9UL03 887 aaKnown RBP14.25□□□□□ -0.13
PNKP-228ENST00000637325 ERVW-1Q9UQF0 538 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 HS3ST4Q9Y661 456 aa14.25□□□□□ -0.13
PNKP-228ENST00000637325 DNAH14Q0VDD8 3507 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 A0A1B0GVM2 712 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 TCAF2A6NFQ2 919 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 MEI4A8MW99 385 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 CYP1A1P04798 512 aaPredicted RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 CFIP05156 583 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 SRPRAP08240 638 aaKnown RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 CCDC172P0C7W6 258 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 PDGFRAP16234 1089 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 CHRNB2P17787 502 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 NNMTP40261 264 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 CXCR3P49682 368 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 ZNF165P49910 485 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 TPMTP51580 245 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 IRX4P78413 519 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 ECT2LQ008S8 904 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 ZNF177Q13360 481 aaPredicted RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 SLC12A1Q13621 1099 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 DUOXA1Q1HG43 343 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 PLEKHG6Q3KR16 790 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 WDR45BQ5MNZ6 344 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 LRRC31Q6UY01 552 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 RABEPKQ7Z6M1 372 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 PHLDB2Q86SQ0 1253 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 FAM124AQ86V42 546 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 APCDD1Q8J025 514 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 SLC30A5Q8TAD4 765 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 CEP76Q8TAP6 659 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 ZNF419Q96HQ0 510 aaPredicted RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 TBCBQ99426 244 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 C11orf70Q9BRQ4 267 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 GPR174Q9BXC1 333 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 PRSS16Q9NQE7 514 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 TMEM74BQ9NUR3 256 aa14.24□□□□□ -0.13
PNKP-228ENST00000637325 WSB2Q9NYS7 404 aaPredicted RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 EVLQ9UI08 416 aaPredicted RBP14.24□□□□□ -0.13
PNKP-228ENST00000637325 LNP1A1A4G5 178 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 C4orf47A7E2U8 309 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 RNASEH1O60930 286 aaKnown RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 ADCY5O95622 1261 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 DNTTP04053 509 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 TFE3P19532 575 aaPredicted RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 MMP8P22894 467 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 HOXD12P35452 270 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 FLT3P36888 993 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 GGCXP38435 758 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 CTSOP43234 321 aaPredicted RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 NSFP46459 744 aaKnown RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 RPS14P62263 151 aaKnown RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 CENPCQ03188 943 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 SULT2A1Q06520 285 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 TTC31Q49AM3 519 aaPredicted RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 DAB2IPQ5VWQ8 1189 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 ZNF776Q68DI1 518 aaPredicted RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 LRSAM1Q6UWE0 723 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 APTXQ7Z2E3 356 aaKnown RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 SLC41A1Q8IVJ1 513 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 DHX40Q8IX18 779 aaKnown RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 IGSF8Q969P0 613 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 NT5C3BQ969T7 300 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 PGAP3Q96FM1 320 aaPredicted RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 CFAP57Q96MR6 1250 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 TMEM9BQ9NQ34 198 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 METTL5Q9NRN9 209 aaKnown RBP14.23□□□□□ -0.13
PNKP-228ENST00000637325 ARHGEF38Q9NXL2 777 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 CABIN1Q9Y6J0 2220 aa14.23□□□□□ -0.13
PNKP-228ENST00000637325 TEX33O43247 280 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 SIN3BO75182 1162 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 CLDN11O75508 207 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 GNSP15586 552 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 FERP16591 822 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 MZF1P28698 734 aaPredicted RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 RDXP35241 583 aaKnown RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 NUMBP49757 651 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 ATXN3P54252 364 aaPredicted RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 CDH4P55283 916 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 TPM4P67936 248 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 ZBTB16Q05516 673 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 SFSWAPQ12872 951 aaKnown RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 HNRNPA1L2Q32P51 320 aaKnown RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 UAP1L1Q3KQV9 507 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 ACBD5Q5T8D3 534 aaPredicted RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 OTUD1Q5VV17 481 aaPredicted RBP14.22□□□□□ -0.13
PNKP-228ENST00000637325 SLC23A3Q6PIS1 610 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 ARCQ7LC44 396 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 C14orf80Q86SX3 495 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 KDM1BQ8NB78 822 aa14.22□□□□□ -0.13
PNKP-228ENST00000637325 GANCQ8TET4 914 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms