RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 NBEAQ8NFP9 2946 aa19.06■□□□□ 0.64
CLN3-241ENST00000635861 EDDM13A0A1B0GTR0 161 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 SRRM3A6NNA2 597 aaPredicted RBP19.05■□□□□ 0.64
CLN3-241ENST00000635861 E5RJQ4 531 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 BIN1O00499 593 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 THAP12O43422 761 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 SIN3BO75182 1162 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 FSBPO95073 299 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 CALCAP01258 141 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 TACR2P21452 398 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 ECT2LQ008S8 904 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 SULT2A1Q06520 285 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 PDCLQ13371 301 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 RNF219Q5W0B1 726 aaPredicted RBP19.05■□□□□ 0.64
CLN3-241ENST00000635861 KIAA0895LQ68EN5 471 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 SKA1Q96BD8 255 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 FBXL12Q9NXK8 326 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 CHMP5Q9NZZ3 219 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 APEX2Q9UBZ4 518 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 RWDD2AQ9UIY3 292 aa19.05■□□□□ 0.64
CLN3-241ENST00000635861 GOLGA4Q13439 2230 aaKnown RBP19.05■□□□□ 0.64
CLN3-241ENST00000635861 LRRC72A6NJI9 287 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 KCNU1A8MYU2 1149 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 F5H5T6 163 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 PCDHGA12O60330 932 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 MOCS2O96007 188 aaPredicted RBP19.04■□□□□ 0.64
CLN3-241ENST00000635861 NNMTP40261 264 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 CCT8P50990 548 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 SNX16P57768 344 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 RACK1P63244 317 aaKnown RBP19.04■□□□□ 0.64
CLN3-241ENST00000635861 CST6Q15828 149 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 KIF19Q2TAC6 998 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 INAVAQ3KP66 663 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 FSCBQ5H9T9 825 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 C9orf64Q5T6V5 341 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 GBP6Q6ZN66 633 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 CHSY1Q86X52 802 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 LGI2Q8N0V4 545 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 ADAM32Q8TC27 787 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 MYEOVQ96EZ4 313 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 PCDHGC3Q9UN70 934 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 ITPR1Q14643 2758 aa19.04■□□□□ 0.64
CLN3-241ENST00000635861 DOCK4Q8N1I0 1966 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 A0A1W2PPC4 97 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 DKK1O94907 266 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 ADH1BP00325 375 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 IGHV4-34P06331 123 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 PRKCSHP14314 528 aaPredicted RBP19.03■□□□□ 0.64
CLN3-241ENST00000635861 GRK6P43250 576 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 VASPP50552 380 aaPredicted RBP19.03■□□□□ 0.64
CLN3-241ENST00000635861 PLK1P53350 603 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 CDK17Q00537 523 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 ZC3H12AQ5D1E8 599 aaKnown RBP19.03■□□□□ 0.64
CLN3-241ENST00000635861 EFHC1Q5JVL4 640 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 RABGAP1LQ5R372 815 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 RAP1GAP2Q684P5 730 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 ADAT2Q7Z6V5 191 aaKnown RBP19.03■□□□□ 0.64
CLN3-241ENST00000635861 CFAP52Q8N1V2 620 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 OR2T34Q8NGX1 318 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 RHBDD1Q8TEB9 315 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 GANCQ8TET4 914 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 NOX5Q96PH1 765 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 ORAI3Q9BRQ5 295 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 KIAA1468Q9P260 1216 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 CYTH4Q9UIA0 394 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 CEP83Q9Y592 693 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 SNX11Q9Y5W9 270 aa19.03■□□□□ 0.64
CLN3-241ENST00000635861 A0A1B0GVM2 712 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 TCAF2A6NFQ2 919 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 VILLO15195 856 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 HSF2BPO75031 334 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 ABCB4P21439 1286 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 CCR1P32246 355 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 CTSKP43235 329 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 GALCP54803 685 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 CCNI2Q6ZMN8 369 aaPredicted RBP19.02■□□□□ 0.64
CLN3-241ENST00000635861 SND1Q7KZF4 910 aaKnown RBP eCLIP19.02■□□□□ 0.641e-7■■■□□ 15.8
CLN3-241ENST00000635861 DHX40Q8IX18 779 aaKnown RBP19.02■□□□□ 0.64
CLN3-241ENST00000635861 SHC3Q92529 594 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 SLC2A13Q96QE2 648 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 PRMT1Q99873 361 aaKnown RBP19.02■□□□□ 0.64
CLN3-241ENST00000635861 OMDQ99983 421 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 ACE2Q9BYF1 805 aaPredicted RBP19.02■□□□□ 0.64
CLN3-241ENST00000635861 TMEM51Q9NW97 253 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 SLCO1B1Q9Y6L6 691 aa19.02■□□□□ 0.64
CLN3-241ENST00000635861 KNTC1P50748 2209 aa19.02■□□□□ 0.63
CLN3-241ENST00000635861 C10orf142B7Z368 130 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 MID1O15344 667 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 GADD45BO75293 160 aaPredicted RBP19.01■□□□□ 0.63
CLN3-241ENST00000635861 CAPNS1P04632 268 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 C5AR1P21730 350 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 SLC8A1P32418 973 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 CCR5P51681 352 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 ELAVL3Q14576 367 aaKnown RBP19.01■□□□□ 0.63
CLN3-241ENST00000635861 EXOC3L4Q17RC7 722 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 SLCO6A1Q86UG4 719 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 PROSER1Q86XN7 944 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 CCAR2Q8N163 923 aaKnown RBP19.01■□□□□ 0.63
CLN3-241ENST00000635861 PPP1R13BQ96KQ4 1090 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 MTG2Q9H4K7 406 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms