RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 FCER1AP12319 257 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 FSHRP23945 695 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 CNSTQ6PJW8 725 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 ARHGAP36Q6ZRI8 547 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 ZNF677Q86XU0 584 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 AFG1LQ8WV93 481 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 CDCA7Q9BWT1 371 aaPredicted RBP15.3■□□□□ 0.04
COL5A1-208ENST00000618395 DENND4BO75064 1496 aaPredicted RBP15.3■□□□□ 0.04
COL5A1-208ENST00000618395 NCK1P16333 377 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 GPC1P35052 558 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 CA9Q16790 459 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 FAM126BQ8IXS8 530 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.3■□□□□ 0.04
COL5A1-208ENST00000618395 MID1O15344 667 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 NR6A1Q15406 480 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 LRRC69Q6ZNQ3 347 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 FAM47BQ8NA70 645 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 TRNT1Q96Q11 434 aaKnown RBP15.3■□□□□ 0.04
COL5A1-208ENST00000618395 SLC35C2Q9NQQ7 365 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 PTGFRNQ9P2B2 879 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 TMEM5Q9Y2B1 443 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 NEK3P51956 506 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 PTENP60484 403 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 PCSK7Q16549 785 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 OR5J2Q8NH18 312 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 CHST12Q9NRB3 414 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 DPP3Q9NY33 737 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 TJP2Q9UDY2 1190 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 SLC30A1Q9Y6M5 507 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 FLT1P17948 1338 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 ISPDA4D126 451 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 PDXKO00764 312 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 MRASO14807 208 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 CLUP10909 449 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 NCAM1P13591 858 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 PSMA1P25786 263 aaKnown RBP15.3■□□□□ 0.04
COL5A1-208ENST00000618395 GALNT3Q14435 633 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 ZNF234Q14588 700 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 RFX4Q33E94 735 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 IQSEC1Q6DN90 963 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 PALB2Q86YC2 1186 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 SLC7A5P2Q9GIP4 190 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 NDUFAF4Q9P032 175 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 GIT1Q9Y2X7 761 aa15.3■□□□□ 0.04
COL5A1-208ENST00000618395 NCKAP5LQ9HCH0 1330 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CBX5P45973 191 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 SMTNL2Q2TAL5 461 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 TTLL9Q3SXZ7 439 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 COA7Q96BR5 231 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 GTPBP2Q9BX10 602 aaKnown RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PCDH18Q9HCL0 1135 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PREBQ9HCU5 417 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 C2orf74A8MZ97 194 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 GRK4P32298 578 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CCNA1P78396 465 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 ARHGAP27Q6ZUM4 889 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 SMYD1Q8NB12 490 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CKAP2Q8WWK9 683 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PGM2Q96G03 612 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CYP4F12Q9HCS2 524 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 RBAKQ9NYW8 714 aaPredicted RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 DDX3XO00571 662 aaKnown RBP eCLIP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 ZRANB3Q5FWF4 1079 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CCDC17Q96LX7 622 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 ZSWIM1Q9BR11 485 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 NR3C2P08235 984 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 SHQ1Q6PI26 577 aaKnown RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 B3GALNT2Q8NCR0 500 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PIGSQ96S52 555 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 TRIT1Q9H3H1 467 aaKnown RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 OR6C70A6NIJ9 312 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PSMD12O00232 456 aaPredicted RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 C9P02748 559 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 LYNP07948 512 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 TPBGLP0DKB5 382 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 E2F2Q14209 437 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 ERI1Q8IV48 349 aaKnown RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 RAB2BQ8WUD1 216 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 DIRAS2Q96HU8 199 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 METTL8Q9H825 291 aaKnown RBP15.29■□□□□ 0.04
COL5A1-208ENST00000618395 RPS6KA6Q9UK32 745 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 GNG14A0A1W2PPG7 69 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CASKO14936 926 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CHRM3P20309 590 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 DPYDQ12882 1025 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 RAB11FIP2Q7L804 512 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 FNDC5Q8NAU1 212 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 OR52K2Q8NGK3 314 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PHB2Q99623 299 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 PNMA3Q9UL41 463 aa15.29■□□□□ 0.04
COL5A1-208ENST00000618395 CSPG5O95196 566 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 CYP2C8P10632 490 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 ALADP13716 330 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 DDX39BQ13838 428 aaKnown RBP15.28■□□□□ 0.04
COL5A1-208ENST00000618395 C4orf46Q504U0 113 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 LDLRAP1Q5SW96 308 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 PQLC1Q8N2U9 271 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 GMCL1Q96IK5 515 aa15.28■□□□□ 0.04
COL5A1-208ENST00000618395 TOPORSQ9NS56 1045 aaPredicted RBP15.28■□□□□ 0.04
COL5A1-208ENST00000618395 DMGDHQ9UI17 866 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms