RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TTKP33981 857 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 HPCAL1P37235 193 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 MAGEA4P43358 317 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 CBX5P45973 191 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ITGA8P53708 1063 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TXNL4AP83876 142 aaKnown RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 ECT2LQ008S8 904 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 GALNT2Q10471 571 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 MTMR1Q13613 665 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TFDP1Q14186 410 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ADGRE1Q14246 886 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 NEK5Q6P3R8 708 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 PADI6Q6TGC4 694 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 SYTL5Q8TDW5 730 aaPredicted RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 TTC9Q92623 222 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 SLC35C1Q96A29 364 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TXNDC15Q96J42 360 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 C9orf72Q96LT7 481 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 NACC1Q96RE7 527 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 POP1Q99575 1024 aaKnown RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 TRIM56Q9BRZ2 755 aaKnown RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 CCDC106Q9BWC9 280 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 WNT8AQ9H1J5 351 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 POLMQ9NP87 494 aaPredicted RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 KCNK4Q9NYG8 393 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TMCC3Q9ULS5 477 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ARHGAP26Q9UNA1 814 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 SLC8A2Q9UPR5 921 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 A0A087WXM4 84 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 FAM237BA0A1B0GVD1 139 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 GSTTP1A0A1W2PQM5 241 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 POC1B-GALNT4F8VUJ3 575 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 hCG_2039718K7EN88 272 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 PDXKO00764 312 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 ACSL4O60488 711 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 NUDT1P36639 197 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 COPZ1P61923 177 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 KRT17Q04695 432 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 STX3Q13277 289 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 PRKD1Q15139 912 aaPredicted RBP10.46□□□□□ -0.73
VPS39-214ENST00000614932 INAVAQ3KP66 663 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 TKFCQ3LXA3 575 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 LRIT3Q3SXY7 679 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 CBWD6Q4V339 395 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 CBWD3Q5JTY5 395 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 CBWD5Q5RIA9 395 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 SEL1L2Q5TEA6 688 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 ANGEL2Q5VTE6 544 aaKnown RBP10.46□□□□□ -0.73
VPS39-214ENST00000614932 UBL4BQ8N7F7 174 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 ZNF347Q96SE7 839 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 RMDN3Q96TC7 470 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 PNPLA3Q9NST1 481 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 SEPT11Q9NVA2 429 aaKnown RBP10.46□□□□□ -0.73
VPS39-214ENST00000614932 TCEAL9Q9UHQ7 104 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 CDH22Q9UJ99 828 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 ANAPC5Q9UJX4 755 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 ST14Q9Y5Y6 855 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 ZHX2Q9Y6X8 837 aa10.46□□□□□ -0.73
VPS39-214ENST00000614932 MIF4GDA9UHW6 222 aaKnown RBP10.46□□□□□ -0.74
VPS39-214ENST00000614932 ASNA1O43681 348 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 SORBS2O94875 1100 aaKnown RBP10.46□□□□□ -0.74
VPS39-214ENST00000614932 PRLP01236 227 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 ITIH1P19827 911 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 TRAF2Q12933 501 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 BAATQ14032 418 aaPredicted RBP10.46□□□□□ -0.74
VPS39-214ENST00000614932 ZNF846Q147U1 533 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 RALGPS1Q5JS13 557 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 C6orf10Q5SRN2 563 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 ZNF720Q7Z2F6 126 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 KCTD20Q7Z5Y7 419 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 TMEM151BQ8IW70 566 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 DAW1Q8N136 415 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 ACDQ96AP0 544 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 CFAP36Q96G28 342 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 SERHL2Q9H4I8 314 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 NOL6Q9H6R4 1146 aaKnown RBP10.46□□□□□ -0.74
VPS39-214ENST00000614932 PLEKHA5Q9HAU0 1116 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 TUFT1Q9NNX1 390 aa10.46□□□□□ -0.74
VPS39-214ENST00000614932 DNMT3BQ9UBC3 853 aaKnown RBP10.46□□□□□ -0.74
VPS39-214ENST00000614932 A0A1W2PPM1 405 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 IL1BP01584 269 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 CDH15P55291 814 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 FAM205BPQ63HN1 556 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 KRT80Q6KB66 452 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 DSG4Q86SJ6 1040 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 RELL1Q8IUW5 271 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 C7orf57Q8NEG2 295 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 SLCO2A1Q92959 643 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 ZBED3Q96IU2 234 aaPredicted RBP10.45□□□□□ -0.74
VPS39-214ENST00000614932 FEM1CQ96JP0 617 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 FIZ1Q96SL8 496 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 WWP1Q9H0M0 922 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 TMEM206Q9H813 350 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 SYTL2Q9HCH5 934 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 SCUBE2Q9NQ36 999 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.45□□□□□ -0.74
VPS39-214ENST00000614932 UCKL1Q9NWZ5 548 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 KLQ9UEF7 1012 aa10.45□□□□□ -0.74
VPS39-214ENST00000614932 CHORDC1Q9UHD1 332 aaPredicted RBP10.45□□□□□ -0.74
VPS39-214ENST00000614932 PRR5-ARHGAP8B1AHC4 643 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms