RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CILPO75339 1184 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 HOXC6P09630 235 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 INSRRP14616 1297 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ADORA2AP29274 412 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 GPD2P43304 727 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 TTLL4Q14679 1199 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 TEDDM1Q5T9Z0 273 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 TMEM198Q66K66 360 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 KLC3Q6P597 504 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 DDIASQ8IXT1 998 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 PDCD6IPQ8WUM4 868 aaKnown RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 SLC4A5Q9BY07 1137 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ZNF408Q9H9D4 720 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 SIRPGQ9P1W8 387 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 MSCO60682 206 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 TMCC1O94876 653 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 SETSIPP0DME0 302 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ACAT1P24752 427 aaKnown RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 MAPK10P53779 464 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 CCDC153Q494R4 210 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 PPM1LQ5SGD2 360 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ITPRIPL1Q6GPH6 555 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 C16orf87Q6PH81 154 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ZBTB49Q6ZSB9 765 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 KCNMB4Q86W47 210 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 EGFL6Q8IUX8 553 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 URGCPQ8TCY9 931 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 PHF21BQ96EK2 531 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 P2RY11Q96G91 374 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 VPS39Q96JC1 886 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ADAMTS6Q9UKP5 1117 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 GNEQ9Y223 722 aaKnown RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 KLF11O14901 512 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 TIMM44O43615 452 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 RGS20O76081 388 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 C2P06681 752 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 PTPRAP18433 802 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 PTPN7P35236 360 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 GRIA4P48058 902 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 GALK1P51570 392 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 KPNA2P52292 529 aaKnown RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 SLC9B1Q4ZJI4 515 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 SETD3Q86TU7 594 aaPredicted RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 ADGRF2Q8IZF7 708 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 SNX31Q8N9S9 440 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 GABPB2Q8TAK5 448 aaPredicted RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 CLEC4CQ8WTT0 213 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 GATA6Q92908 595 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 SIKE1Q9BRV8 207 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 ACE2Q9BYF1 805 aaPredicted RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 PLEKHA5Q9HAU0 1116 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 DDIT4Q9NX09 232 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 WARS2Q9UGM6 360 aaKnown RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 KIAA1257Q9ULG3 409 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 PSMD13Q9UNM6 376 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 AFG3L2Q9Y4W6 797 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 STRCP1A6NGW2 1772 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 A0A088AWK7 358 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 STX16-NPEPL1H3BU86 382 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 EDN1P05305 212 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 ADARP55265 1226 aaKnown RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 ADIGQ0VDE8 80 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 GRTP1Q5TC63 336 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 TTC33Q6PID6 262 aaPredicted RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 CHST13Q8NET6 341 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 SLC2A14Q8TDB8 520 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 PBXIP1Q96AQ6 731 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 CNDP1Q96KN2 507 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 CSPG4P5Q96PW8 444 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 ZNF670Q9BS34 389 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 C20orf27Q9GZN8 174 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 SNTG2Q9NY99 539 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 ATXN10Q9UBB4 475 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 ACOT9Q9Y305 439 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 RREB1Q92766 1687 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 RGSL1A5PLK6 1076 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 EGFRP00533 1210 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 CHRNGP07510 517 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 NCAM1P13591 858 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 RPL14P50914 215 aaKnown RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 CSHL1Q14406 222 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 C16orf72Q14CZ0 275 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 FKBP1CQ5VVH2 108 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 TSHZ1Q6ZSZ6 1077 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 DSELQ8IZU8 1212 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 KCTD4Q8WVF5 259 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 OR52B2Q96RD2 323 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 CPNE1Q99829 537 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 WDR83Q9BRX9 315 aaKnown RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 CDH19Q9H159 772 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 TRPC7Q9HCX4 862 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 ERAP1Q9NZ08 941 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 MFHAS1Q9Y4C4 1052 aa12.87□□□□□ -0.35
LIG1-221ENST00000613670 MAFBQ9Y5Q3 323 aaPredicted RBP12.87□□□□□ -0.35
LIG1-221ENST00000613670 BCLAF3A2AJT9 711 aaKnown RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 VAPBO95292 243 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 MYL4P12829 197 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 ITGAXP20702 1163 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 ZNF132P52740 706 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 PGGT1BP53609 377 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms