RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NAPEPLDQ6IQ20 393 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 MSANTD2Q6P1R3 559 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 PRPF39Q86UA1 669 aaKnown RBP6.53□□□□□ -1.36
CUX1-220ENST00000607092 ADIPOR2Q86V24 386 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 SLC4A11Q8NBS3 891 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 KIAA0895Q8NCT3 520 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 ZNF248Q8NDW4 579 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 PIP4K2CQ8TBX8 421 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 SAP25Q8TEE9 199 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 SORCS1Q8WY21 1168 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 RFFLQ8WZ73 363 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 GRAMD1AQ96CP6 724 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 ZNF578Q96N58 590 aaPredicted RBP6.53□□□□□ -1.36
CUX1-220ENST00000607092 FCRL3Q96P31 734 aaPredicted RBP6.53□□□□□ -1.36
CUX1-220ENST00000607092 ULBP1Q9BZM6 244 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 PRORYQ9H606 182 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 TMEM51Q9NW97 253 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 NCKIPSDQ9NZQ3 722 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 SLC12A6Q9UHW9 1150 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 TSPAN16Q9UKR8 245 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 CLCA2Q9UQC9 943 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 ADGRG1Q9Y653 693 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 LOC400499M0QZD8 3231 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 PTPRBP23467 1997 aa6.53□□□□□ -1.36
CUX1-220ENST00000607092 UBR5O95071 2799 aaPredicted RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 PLXNB3Q9ULL4 1909 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 FAM149AA5PLN7 773 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 NEMP2A6NFY4 417 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 FAM47DPA6NHR8 397 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ERVH48-1M5A8F1 160 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ALOX15BO15296 676 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SLC16A3O15427 465 aaKnown RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 LATO43561 262 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 KLRC4O43908 158 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TBL1XO60907 577 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 APOEP02649 317 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 PAEPP09466 180 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ZSCAN22P10073 491 aaPredicted RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 SLC2A3P11169 496 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 CD19P15391 556 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 GLDCP23378 1020 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 CMA1P23946 247 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ACP1P24666 158 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SLC8A1P32418 973 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ACADVLP49748 655 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 RAD23BP54727 409 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TBX4P57082 545 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 PCBP4P57723 403 aaKnown RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 TMPRSS3P57727 454 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 NXPH1P58417 271 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 PPP3CAQ08209 521 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ADIGQ0VDE8 80 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TARDBPQ13148 414 aaKnown RBP eCLIP6.52□□□□□ -1.372e-7■■■■■ 27.6
CUX1-220ENST00000607092 CUL2Q13617 745 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 STAT4Q14765 748 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 MEA1Q16626 185 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 GOLGA7BQ2TAP0 167 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D25Q3MII6 688 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SETMARQ53H47 684 aaPredicted RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 HES3Q5TGS1 186 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 PIK3R6Q5UE93 754 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 NEK5Q6P3R8 708 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 FBXL19Q6PCT2 694 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 NCEH1Q6PIU2 408 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 BEND5Q7L4P6 421 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ZSCAN30Q86W11 494 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 DCP2Q8IU60 420 aaKnown RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 EID2Q8N6I1 236 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 DCBLD1Q8N8Z6 715 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ZNF454Q8N9F8 522 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ADAM32Q8TC27 787 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 CYB5D2Q8WUJ1 264 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TSC1Q92574 1164 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ZDHHC16Q969W1 377 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 CCDC97Q96F63 343 aaPredicted RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 PAGE5Q96GU1 130 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SERAC1Q96JX3 654 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 HSFY1Q96LI6 401 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 CCDC114Q96M63 670 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SLC6A18Q96N87 628 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 BBC3Q96PG8 261 aaPredicted RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 SPAG5Q96R06 1193 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 LGMNQ99538 433 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TSG101Q99816 390 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 APOBEC3GQ9HC16 384 aaKnown RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 RMND1Q9NWS8 449 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 TJP2Q9UDY2 1190 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SERTAD1Q9UHV2 236 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 PCDHA7Q9UN72 937 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 ATP6V1DQ9Y5K8 247 aa6.52□□□□□ -1.37
CUX1-220ENST00000607092 SPTAN1Q13813 2472 aaKnown RBP6.52□□□□□ -1.37
CUX1-220ENST00000607092 ITIH6Q6UXX5 1313 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 MGAQ8IWI9 3026 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 NOTCH2Q04721 2471 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3DA0A087WVF3 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3IA0A087WXS9 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3EA0A087X179 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3KA0A087X1G2 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3FA6NER0 549 aaPredicted RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 YJEFN3A6XGL0 299 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms