RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 MIS12Q9H081 205 aa18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 TOR4AQ9NXH8 423 aa18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 TJP2Q9UDY2 1190 aa18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 ERVW-1Q9UQF0 538 aa18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 PCDHGA1Q9Y5H4 931 aa18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 KNTC1P50748 2209 aa18.45■□□□□ 0.54
SHKBP1-227ENST00000602011 LUC7L3O95232 432 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 ADH1BP00325 375 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 FYNP06241 537 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 C5AR1P21730 350 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 BRD2P25440 801 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 VASPP50552 380 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 SGSHP51688 502 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 GALCP54803 685 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 MARSP56192 900 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 SLC45A4Q5BKX6 768 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 C9orf64Q5T6V5 341 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 TTC39BQ5VTQ0 682 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 NADSYN1Q6IA69 706 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 SND1Q7KZF4 910 aaKnown RBP eCLIP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 TMEM110Q86TL2 294 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 MRGPRX3Q96LB0 322 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 BBC3Q96PG8 261 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 ZSWIM1Q9BR11 485 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 SLC4A5Q9BY07 1137 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 KDM4CQ9H3R0 1056 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 THAP9Q9H5L6 903 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 POPDC2Q9HBU9 364 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 SCUBE2Q9NQ36 999 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 ST7Q9NRC1 585 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 TMEM51Q9NW97 253 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 BTBD3Q9Y2F9 522 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 ITIH6Q6UXX5 1313 aa18.44■□□□□ 0.54
SHKBP1-227ENST00000602011 A0A1B0GTQ1 180 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 SIN3BO75182 1162 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 IGHV4-34P06331 123 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 GLI1P08151 1106 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 GOT1P17174 413 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 SLC8A1P32418 973 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 RPS24P62847 133 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 YWHAZP63104 245 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 KCNH2Q12809 1159 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 SMAD1Q15797 465 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 DCAF6Q58WW2 860 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 PITRM1Q5JRX3 1037 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 TTI2Q6NXR4 508 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 LAYNQ6UX15 382 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 TMPRSS12Q86WS5 348 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 OXR1Q8N573 874 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 PDCD7Q8N8D1 485 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 ATP6V0D2Q8N8Y2 350 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 WFDC5Q8TCV5 224 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 ELF4Q99607 663 aaPredicted RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 ORAI3Q9BRQ5 295 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 INTS6Q9UL03 887 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 NAALADL1Q9UQQ1 740 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 CEP83Q9Y592 693 aa18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 GOLGA4Q13439 2230 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-227ENST00000602011 FAM149AA5PLN7 773 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 H0Y8X5 98 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 PIK3R2O00459 728 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 KCNK3O14649 394 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 MAGEC1O60732 1142 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 AFPP02771 609 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 PLK1P53350 603 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 SNX16P57768 344 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 BECN1Q14457 450 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 ELAVL3Q14576 367 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 CCDC157Q569K6 752 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 RRAGAQ7L523 313 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 DSG4Q86SJ6 1040 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 TRIM59Q8IWR1 403 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 CLEC4CQ8WTT0 213 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 CRELD1Q96HD1 420 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 LRIG1Q96JA1 1093 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 PRICKLE1Q96MT3 831 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 NEUROG2Q9H2A3 272 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 ERVMER34-1Q9H9K5 563 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 FTSJ1Q9UET6 329 aa18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHKBP1-227ENST00000602011 BPTFQ12830 3046 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 URB1O60287 2271 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 C10orf142B7Z368 130 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 F5H5T6 163 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 MID1O15344 667 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 SLC7A4O43246 635 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 RNASEH2AO75792 299 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 CD38P28907 300 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 ARRB1P49407 418 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 OVGP1Q12889 678 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 RABGAP1LQ5R372 815 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 FAM46CQ5VWP2 391 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 NCEH1Q6PIU2 408 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 MMAAQ8IVH4 418 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 DHX40Q8IX18 779 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 NELFBQ8WX92 580 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 ZNF606Q8WXB4 792 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 KAT5Q92993 513 aa18.41■□□□□ 0.54
SHKBP1-227ENST00000602011 FAM129BQ96TA1 746 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms