RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ABCG1P45844 678 aa20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 LBRQ14739 615 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 ZRSR2Q15696 482 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 DUSP28Q4G0W2 176 aa20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 PSTKQ8IV42 348 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 PLD6Q8N2A8 252 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 DCLK2Q8N568 766 aa20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 OXCT2Q9BYC2 517 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 KLHL8Q9P2G9 620 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-225ENST00000600733 SBF1O95248 1867 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 ARHGAP42A6NI28 874 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 HUS1O60921 280 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 AMHP03971 560 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 GRK2P25098 689 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 NOS2P35228 1153 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 CCNA1P78396 465 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 HIC1Q14526 733 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 PAFAH1B3Q15102 231 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 ZNF669Q96BR6 464 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 TNIP3Q96KP6 325 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 AGAP2Q99490 1192 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 STN1Q9H668 368 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 IGSF9Q9P2J2 1179 aa20.72■□□□□ 0.91
SHKBP1-225ENST00000600733 ZNF195O14628 629 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 DCLK1O15075 740 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 SORBS2O94875 1100 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 IGFBP6P24592 240 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 ABCE1P61221 599 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 AP2B1P63010 937 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 DEUP1Q05D60 604 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 SNAPC2Q13487 334 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 PAQR9Q6ZVX9 377 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 BNIPLQ7Z465 357 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 CPNE1Q99829 537 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 ANLNQ9NQW6 1124 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 NDE1Q9NXR1 346 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 I6L893 689 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 KLHL2O95198 593 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 HOXD8P13378 290 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 NPR3P17342 541 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 PTPN3P26045 913 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 COPAP53621 1224 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 LILRA4P59901 499 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 INSCQ1MX18 579 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 SPANXN3Q5MJ09 141 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 IZUMO2Q6UXV1 221 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 STRA8Q7Z7C7 330 aa20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 HNRNPABQ99729 332 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-225ENST00000600733 SF3B1O75533 1304 aaKnown RBP eCLIP20.7■□□□□ 0.96e-8■■■■■ 58.8
SHKBP1-225ENST00000600733 SMIM10L2AP0DMW4 78 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 SMIM10L2BP0DMW5 78 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 CPA3P15088 417 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 USP4Q13107 963 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 PEX6Q13608 980 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 DLG2Q15700 870 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 GRTP1Q5TC63 336 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 PDPK2PQ6A1A2 396 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 FSTL4Q6MZW2 842 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 LIMS2Q7Z4I7 341 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 DPP9Q86TI2 863 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 WNT8BQ93098 351 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 RBBP8Q99708 897 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 CAB39LQ9H9S4 337 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 LRRC4Q9HBW1 653 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 DNAJC28Q9NX36 388 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 STAP1Q9ULZ2 295 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 BPTFQ12830 3046 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 NRP1O14786 923 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 CYP2C9P11712 490 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 ERCC2P18074 760 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 NCF2P19878 526 aaPredicted RBP20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 MX2P20592 715 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 PNPLA4P41247 253 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 GARSP41250 739 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 HARS2P49590 506 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 EPHB1P54762 984 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 IRF9Q00978 393 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 GRIK3Q13003 919 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 SV2CQ496J9 727 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 CLEC20AQ6ZU45 233 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 SIX6OS1Q8N1H7 587 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 ARRDC4Q8NCT1 418 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 SLC7A14Q8TBB6 771 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 DNAJB3Q8WWF6 145 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 PPP1R12CQ9BZL4 782 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 CYP4F11Q9HBI6 524 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 VANGL2Q9ULK5 521 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 NUP205Q92621 2012 aa20.7■□□□□ 0.9
SHKBP1-225ENST00000600733 TSC2P49815 1807 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 RRN3P2A6NIE6 340 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 ENO4A6NNW6 628 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 PDE5AO76074 875 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 MAP3K7CLP57077 242 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 OR52E8Q6IFG1 317 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 NAPRTQ6XQN6 538 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 PHTF2Q8N3S3 785 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 DNAAF3Q8N9W5 541 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 PYDC1Q8WXC3 89 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 MFSD3Q96ES6 412 aa20.69■□□□□ 0.9
SHKBP1-225ENST00000600733 VCXQ9H320 206 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms