RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 CACUL1Q86Y37 369 aa16.32■□□□□ 0.2
VRK3-221ENST00000600284 CCAR2Q8N163 923 aaKnown RBP16.32■□□□□ 0.2
VRK3-221ENST00000600284 C1orf216Q8TAB5 229 aa16.32■□□□□ 0.2
VRK3-221ENST00000600284 ENOX1Q8TC92 643 aaKnown RBP16.32■□□□□ 0.2
VRK3-221ENST00000600284 NAA15Q9BXJ9 866 aaKnown RBP16.32■□□□□ 0.2
VRK3-221ENST00000600284 MIR1-1HGQ9H1L0 117 aa16.32■□□□□ 0.2
VRK3-221ENST00000600284 PDCL3Q9H2J4 239 aa16.32■□□□□ 0.2
VRK3-221ENST00000600284 EIF2B4Q9UI10 523 aaKnown RBP16.32■□□□□ 0.2
VRK3-221ENST00000600284 ACACBO00763 2458 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 EDDM13A0A1B0GTR0 161 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 PES1O00541 588 aaKnown RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 SIN3BO75182 1162 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 GRAP2O75791 330 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 SEMA4FO95754 770 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 CD59P13987 128 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 UCHL3P15374 230 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 NNMTP40261 264 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 VASPP50552 380 aaPredicted RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 GRIK2Q13002 908 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 RAPGEF1Q13905 1077 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 HSP90AA4PQ58FG1 418 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 C9orf64Q5T6V5 341 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 ACBD5Q5T8D3 534 aaPredicted RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 RNF219Q5W0B1 726 aaPredicted RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 FBXL22Q6P050 247 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 APCDD1Q8J025 514 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 ZCCHC9Q8N567 271 aaKnown RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 PGAP3Q96FM1 320 aaPredicted RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 STK33Q9BYT3 514 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 PABPC3Q9H361 631 aaKnown RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 C6orf106Q9H6K1 298 aaPredicted RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 PLCB1Q9NQ66 1216 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 WASF3Q9UPY6 502 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.31■□□□□ 0.2
VRK3-221ENST00000600284 FHOD1Q9Y613 1164 aa16.31■□□□□ 0.2
VRK3-221ENST00000600284 SYNJ2BP-COX16A0A087WUM0 186 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 M0QYT0 321 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 LSM8O95777 96 aaKnown RBP16.3■□□□□ 0.2
VRK3-221ENST00000600284 F9P00740 461 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 ZNF883P0CG24 379 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 PNMA6AP0CW24 399 aaPredicted RBP16.3■□□□□ 0.2
VRK3-221ENST00000600284 CTSOP43234 321 aaPredicted RBP16.3■□□□□ 0.2
VRK3-221ENST00000600284 NME3Q13232 169 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 C5orf22Q49AR2 442 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 BRMS1LQ5PSV4 323 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 NT5C3BQ969T7 300 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 C18orf8Q96DM3 657 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 RPRD1AQ96P16 312 aaPredicted RBP16.3■□□□□ 0.2
VRK3-221ENST00000600284 NPY6RQ99463 290 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.3■□□□□ 0.2
VRK3-221ENST00000600284 COX16Q9P0S2 106 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 SLCO3A1Q9UIG8 710 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 STAP1Q9ULZ2 295 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 PAXBP1Q9Y5B6 917 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 CACNA1EQ15878 2313 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 PCNX2A6NKB5 2137 aa16.3■□□□□ 0.2
VRK3-221ENST00000600284 TTC34A8MYJ7 566 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 CLDN11O75508 207 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 TRIM16O95361 564 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 CER1O95813 267 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 CD27P26842 260 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 RDXP35241 583 aaKnown RBP16.29■□□□□ 0.2
VRK3-221ENST00000600284 AFF3P51826 1226 aaKnown RBP16.29■□□□□ 0.2
VRK3-221ENST00000600284 FOXC1Q12948 553 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 AUHQ13825 339 aaKnown RBP16.29■□□□□ 0.2
VRK3-221ENST00000600284 CST6Q15828 149 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 RBM43Q6ZSC3 357 aaKnown RBP16.29■□□□□ 0.2
VRK3-221ENST00000600284 SND1Q7KZF4 910 aaKnown RBP eCLIP16.29■□□□□ 0.2
VRK3-221ENST00000600284 ERICH1Q86X53 443 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 ZNF677Q86XU0 584 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 DHX40Q8IX18 779 aaKnown RBP16.29■□□□□ 0.2
VRK3-221ENST00000600284 MSANTD4Q8NCY6 345 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 OR2I1PQ8NGU4 316 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 PTPRN2Q92932 1015 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 BIRC7Q96CA5 298 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 FAM129BQ96TA1 746 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 MTG2Q9H4K7 406 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 WDCPQ9H6R7 721 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 FBXL12Q9NXK8 326 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 ARHGEF38Q9NXL2 777 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 ADAMTS1Q9UHI8 967 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 FZD4Q9ULV1 537 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 TPX2Q9ULW0 747 aaKnown RBP16.29■□□□□ 0.2
VRK3-221ENST00000600284 DAAM1Q9Y4D1 1078 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 HS3ST4Q9Y661 456 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 ADAMTS9Q9P2N4 1935 aa16.29■□□□□ 0.2
VRK3-221ENST00000600284 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.28■□□□□ 0.2
VRK3-221ENST00000600284 PAGE1O75459 146 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 ADH1BP00325 375 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 TPM2P07951 284 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 PDGFRAP16234 1089 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 CXCR3P49682 368 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 CDH4P55283 916 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 SIM1P81133 766 aaPredicted RBP16.28■□□□□ 0.2
VRK3-221ENST00000600284 ZNF177Q13360 481 aaPredicted RBP16.28■□□□□ 0.2
VRK3-221ENST00000600284 TEAD4Q15561 434 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 ST3GAL2Q16842 350 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 SLC25A52Q3SY17 297 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 CDKAL1Q5VV42 579 aa16.28■□□□□ 0.2
VRK3-221ENST00000600284 CXorf57Q6NSI4 855 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms