RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ASTE1Q2TB18 679 aaPredicted RBP15.68■□□□□ 0.1
LIG1-219ENST00000600055 PITRM1Q5JRX3 1037 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 TTC39BQ5VTQ0 682 aaPredicted RBP15.68■□□□□ 0.1
LIG1-219ENST00000600055 SDE2Q6IQ49 451 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 SCYL2Q6P3W7 929 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 ASCL5Q7RTU5 278 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 RASSF3Q86WH2 238 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 ZNF557Q8N988 423 aaPredicted RBP15.68■□□□□ 0.1
LIG1-219ENST00000600055 HMGB4Q8WW32 186 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 TRIM11Q96F44 468 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 CD248Q9HCU0 757 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 POLMQ9NP87 494 aaPredicted RBP15.68■□□□□ 0.1
LIG1-219ENST00000600055 ZNHIT6Q9NWK9 470 aaKnown RBP15.68■□□□□ 0.1
LIG1-219ENST00000600055 KIAA1522Q9P206 1035 aaPredicted RBP15.68■□□□□ 0.1
LIG1-219ENST00000600055 EBF1Q9UH73 591 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 INVSQ9Y283 1065 aa15.68■□□□□ 0.1
LIG1-219ENST00000600055 IGLV3-10A0A075B6K4 115 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.67■□□□□ 0.1
LIG1-219ENST00000600055 FAM72CH0Y354 149 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 MYBL1P10243 752 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 GALCP54803 685 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 CDH4P55283 916 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 ZNF177Q13360 481 aaPredicted RBP15.67■□□□□ 0.1
LIG1-219ENST00000600055 MAPK8IP2Q13387 824 aaPredicted RBP15.67■□□□□ 0.1
LIG1-219ENST00000600055 ENPP2Q13822 863 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 TSR1Q2NL82 804 aaKnown RBP15.67■□□□□ 0.1
LIG1-219ENST00000600055 PLEKHG6Q3KR16 790 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 ARL13BQ3SXY8 428 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 FNDC3BQ53EP0 1204 aaKnown RBP15.67■□□□□ 0.1
LIG1-219ENST00000600055 FAM72AQ5TYM5 149 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 FAM72DQ6L9T8 149 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 LRRC31Q6UY01 552 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 TFAP2DQ7Z6R9 452 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 FAM72BQ86X60 149 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 PYROXD2Q8N2H3 581 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 ARFGAP1Q8N6T3 406 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 ZNF366Q8N895 744 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 NKD2Q969F2 451 aaPredicted RBP15.67■□□□□ 0.1
LIG1-219ENST00000600055 TTC17Q96AE7 1141 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 ARHGEF26Q96DR7 871 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 SLC6A17Q9H1V8 727 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 OR12D3Q9UGF7 316 aa15.67■□□□□ 0.1
LIG1-219ENST00000600055 CCDC163A0A0D9SF12 145 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 SSU72P8A0A1W2PR75 194 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 CLDN11O75508 207 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 ALDH1A2O94788 518 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 ATP5BP06576 529 aaKnown RBP15.66■□□□□ 0.1
LIG1-219ENST00000600055 DLDP09622 509 aaKnown RBP15.66■□□□□ 0.1
LIG1-219ENST00000600055 GABRG2P18507 467 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 SLC18A3Q16572 532 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 LPAL2Q16609 132 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 SERPINA13PQ6UXR4 307 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 SLFN11Q7Z7L1 901 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 ALYREFQ86V81 257 aaKnown RBP15.66■□□□□ 0.1
LIG1-219ENST00000600055 CNGA4Q8IV77 575 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 PGBD3Q8N328 593 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 TC2NQ8N9U0 490 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 SUMF1Q8NBK3 374 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 NTAN1Q96AB6 310 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 ALG14Q96F25 216 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 MRFAP1L1Q96HT8 127 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 PACSIN1Q9BY11 444 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 OSBPL2Q9H1P3 480 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 DEF6Q9H4E7 631 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 NHEJ1Q9H9Q4 299 aaPredicted RBP15.66■□□□□ 0.1
LIG1-219ENST00000600055 GPATCH2LQ9NWQ4 482 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 BCCIPQ9P287 314 aaKnown RBP eCLIP15.66■□□□□ 0.1
LIG1-219ENST00000600055 FZD10Q9ULW2 581 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 PLA2G4CQ9UP65 541 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 SCINQ9Y6U3 715 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 CACNA1HO95180 2353 aa15.66■□□□□ 0.1
LIG1-219ENST00000600055 PRR23AA6NEV1 266 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 DCLK1O15075 740 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 NPC1O15118 1278 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 MOCS3O95396 460 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 LMNAP02545 664 aaKnown RBP15.65■□□□□ 0.1
LIG1-219ENST00000600055 CYP1A2P05177 515 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 EPHX1P07099 455 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 NDUFV2P19404 249 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 MRE11P49959 708 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 SCAPQ12770 1279 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 SIM2Q14190 667 aaPredicted RBP15.65■□□□□ 0.1
LIG1-219ENST00000600055 ACBD5Q5T8D3 534 aaPredicted RBP15.65■□□□□ 0.1
LIG1-219ENST00000600055 MANEALQ5VSG8 457 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 DAB2IPQ5VWQ8 1189 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 RNF219Q5W0B1 726 aaPredicted RBP15.65■□□□□ 0.1
LIG1-219ENST00000600055 PRR23BQ6ZRT6 265 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 FRMD1Q8N878 549 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 FNIP1Q8TF40 1166 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 GAB3Q8WWW8 586 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 RLN3Q8WXF3 142 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 MYO19Q96H55 970 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 BTBD6Q96KE9 485 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 MRGPRX3Q96LB0 322 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 PEBP4Q96S96 227 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 FEM1AQ9BSK4 669 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 NUP85Q9BW27 656 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 ZYG11BQ9C0D3 744 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 EPC1Q9H2F5 836 aa15.65■□□□□ 0.1
LIG1-219ENST00000600055 TMEM245Q9H330 911 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms