RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ANKRD62A6NC57 917 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 PROB1E7EW31 1015 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 TCF4P15884 667 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 MZF1P28698 734 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 CDC25BP30305 580 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 NTSR1P30989 418 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 PXNP49023 591 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 ZNF234Q14588 700 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 ACBD5Q5T8D3 534 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 DAB2IPQ5VWQ8 1189 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 MBLAC2Q68D91 279 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 KIAA1211LQ6NV74 962 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 APCDD1Q8J025 514 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 PYROXD2Q8N2H3 581 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 FAM126AQ9BYI3 521 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 TMEM245Q9H330 911 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 CACNA2D2Q9NY47 1150 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 PPARGC1AQ9UBK2 798 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 EBF1Q9UH73 591 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 FZD10Q9ULW2 581 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 R4GN57 208 aa20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 OTOGLQ3ZCN5 2332 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 LRCH4O75427 683 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 TPM1P09493 284 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 C7P10643 843 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 PSMA2P25787 234 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CSKP41240 450 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 WASP42768 502 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CTSOP43234 321 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 FNTBP49356 437 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CDH4P55283 916 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CDH18Q13634 790 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 PLEKHG6Q3KR16 790 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 PITRM1Q5JRX3 1037 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 NUDT18Q6ZVK8 323 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 WDR5BQ86VZ2 330 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 NLRP14Q86W24 1093 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CPNE8Q86YQ8 564 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CAMKK1Q8N5S9 505 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 NIPA2Q8N8Q9 360 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 ZNF557Q8N988 423 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 MDGA1Q8NFP4 955 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CYB5D2Q8WUJ1 264 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 ATOH1Q92858 354 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 BTBD6Q96KE9 485 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 MRPL47Q9HD33 250 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 ZNHIT6Q9NWK9 470 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 MPP6Q9NZW5 540 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 OR12D3Q9UGF7 316 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 SLC8A2Q9UPR5 921 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 PCDHGA2Q9Y5H1 932 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 STON1Q9Y6Q2 735 aa20.09■□□□□ 0.81
SHKBP1-221ENST00000599833 CCDC163A0A0D9SF12 145 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 TYW5A2RUC4 315 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 TIMM44O43615 452 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 CLDN11O75508 207 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 LRIG2O94898 1065 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 LCA5LO95447 670 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 PRKCHP24723 683 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 CA9Q16790 459 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 EOGTQ5NDL2 527 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 TMEM139Q8IV31 216 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 PANX2Q96RD6 677 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 PSMB7Q99436 277 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 ANP32EQ9BTT0 268 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 NUP85Q9BW27 656 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 CIPCQ9C0C6 399 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 IRF2BPLQ9H1B7 796 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 NDFIP2Q9NV92 336 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 KIAA1522Q9P206 1035 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 RAD54BQ9Y620 910 aa20.08■□□□□ 0.81
SHKBP1-221ENST00000599833 PIEZO1Q92508 2521 aa20.08■□□□□ 0.8
SHKBP1-221ENST00000599833 DMXL1Q9Y485 3027 aa20.08■□□□□ 0.8
SHKBP1-221ENST00000599833 SPAG17Q6Q759 2223 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 H0Y626 953 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 NPC1O15118 1278 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 HRO43593 1189 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 APBB3O95704 486 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 DLDP09622 509 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 HOXB2P14652 356 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 IL1R2P27930 398 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 MIPP30301 263 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 SRSF5Q13243 272 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 ARL13BQ3SXY8 428 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 TRMT11Q7Z4G4 463 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 SLFN11Q7Z7L1 901 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 LONP2Q86WA8 852 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 CHPFQ8IZ52 775 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 FEM1AQ9BSK4 669 aa20.07■□□□□ 0.8
SHKBP1-221ENST00000599833 AKR1B10O60218 316 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 SRGAP2O75044 1071 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 TMEM253P0C7T8 217 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 GABRG2P18507 467 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 L1CAMP32004 1257 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 NUMBP49757 651 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 DGKEP52429 567 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 AIF1P55008 147 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 SLC12A1Q13621 1099 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 HEATR6Q6AI08 1181 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 SCYL2Q6P3W7 929 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms