RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 C10orf142B7Z368 130 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 F5H5T6 163 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 GOLGA8SH3BPF8 625 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 AP5Z1O43299 807 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SYNCRIPO60506 623 aaKnown RBP12.54□□□□□ -0.4
LIG1-217ENST00000599165 CNTN5O94779 1100 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SLC2A3P11169 496 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 POLR2EP19388 210 aaKnown RBP12.54□□□□□ -0.4
LIG1-217ENST00000599165 SDHBP21912 280 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 CD6P30203 668 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SULT1E1P49888 294 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 RPS14P62263 151 aaKnown RBP12.54□□□□□ -0.4
LIG1-217ENST00000599165 UBXN1Q04323 297 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 CDH18Q13634 790 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 ALFQ53S48 1182 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SLC36A4Q6YBV0 504 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 PHLDB2Q86SQ0 1253 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 EMC1Q8N766 993 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 JOSD2Q8TAC2 188 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SLC30A5Q8TAD4 765 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 BAP1Q92560 729 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SIPA1Q96FS4 1042 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 TOE1Q96GM8 510 aaKnown RBP12.54□□□□□ -0.4
LIG1-217ENST00000599165 HSPA12BQ96MM6 686 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 CFAP57Q96MR6 1250 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 EDEM2Q9BV94 578 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 PDCL3Q9H2J4 239 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 CAPN10Q9HC96 672 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 RTN4Q9NQC3 1192 aaKnown RBP12.54□□□□□ -0.4
LIG1-217ENST00000599165 ZNF212Q9UDV6 495 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SLCO3A1Q9UIG8 710 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 VANGL2Q9ULK5 521 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 ERVW-1Q9UQF0 538 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 DAAM1Q9Y4D1 1078 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 SLCO1B1Q9Y6L6 691 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 ITIH6Q6UXX5 1313 aa12.54□□□□□ -0.4
LIG1-217ENST00000599165 TP53BP1Q12888 1972 aaPredicted RBP12.54□□□□□ -0.4
LIG1-217ENST00000599165 PLXNA2O75051 1894 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 A0A1B0GVM2 712 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 TCAF2A6NFQ2 919 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 TTC34A8MYJ7 566 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 KHNYNO15037 678 aaKnown RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 SIN3BO75182 1162 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 ENDOD1O94919 500 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 ATP5BP06576 529 aaKnown RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 VAV1P15498 845 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 PDGFRAP16234 1089 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 ABCB4P21439 1286 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 MAOBP27338 520 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 STAT1P42224 750 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 STK19P49842 368 aaPredicted RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 PLK1P53350 603 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 ARID5BQ14865 1188 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 HNRNPA1L2Q32P51 320 aaKnown RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 SLC25A52Q3SY17 297 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 TRIM61Q5EBN2 209 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 C9orf64Q5T6V5 341 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 SH3PXD2AQ5TCZ1 1133 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 E4F1Q66K89 784 aaPredicted RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 SLC23A3Q6PIS1 610 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 ARCQ7LC44 396 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 ZNF557Q8N988 423 aaPredicted RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 PRCCQ92733 491 aaPredicted RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 C11orf70Q9BRQ4 267 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 TKTL2Q9H0I9 626 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 RSPH9Q9H1X1 276 aaPredicted RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 METTL5Q9NRN9 209 aaKnown RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 RRN3Q9NYV6 651 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 KIAA1522Q9P206 1035 aaPredicted RBP12.53□□□□□ -0.4
LIG1-217ENST00000599165 PLA2G4CQ9UP65 541 aa12.53□□□□□ -0.4
LIG1-217ENST00000599165 CABIN1Q9Y6J0 2220 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 IGLV3-10A0A075B6K4 115 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 TYW5A2RUC4 315 aaKnown RBP12.52□□□□□ -0.41
LIG1-217ENST00000599165 C2CD4BA6NLJ0 364 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 DRGXA6NNA5 263 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 C4orf47A7E2U8 309 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 H0Y626 953 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 ASLP04424 464 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 ACSL1P33121 698 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 GSCP56915 257 aaPredicted RBP12.52□□□□□ -0.41
LIG1-217ENST00000599165 SNX16P57768 344 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 FOXK2Q01167 660 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 ARID5AQ03989 594 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 CLEC16AQ2KHT3 1053 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 CCDC14Q49A88 953 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 BRMS1LQ5PSV4 323 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 MON1BQ7L1V2 547 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 IRF2BP2Q7Z5L9 587 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 PHF13Q86YI8 300 aaPredicted RBP12.52□□□□□ -0.41
LIG1-217ENST00000599165 KDM1BQ8NB78 822 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 NEK11Q8NG66 645 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 C1orf216Q8TAB5 229 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 FRS2Q8WU20 508 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 DNASE2BQ8WZ79 361 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 PTPRN2Q92932 1015 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 RNF34Q969K3 372 aa12.52□□□□□ -0.41
LIG1-217ENST00000599165 RPL10LQ96L21 214 aaKnown RBP12.52□□□□□ -0.41
LIG1-217ENST00000599165 NAP1L5Q96NT1 182 aaPredicted RBP12.52□□□□□ -0.41
LIG1-217ENST00000599165 RPRD1AQ96P16 312 aaPredicted RBP12.52□□□□□ -0.41
LIG1-217ENST00000599165 SPAG5Q96R06 1193 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms