RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GFRA3O60609 400 aa15□□□□□ -0.01
VRK3-206ENST00000594090 CLDN11O75508 207 aa15□□□□□ -0.01
VRK3-206ENST00000594090 CNTN5O94779 1100 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ATP5BP06576 529 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 DLDP09622 509 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 ADRA1BP35368 520 aa15□□□□□ -0.01
VRK3-206ENST00000594090 EIF4A3P38919 411 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 CSKP41240 450 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ADKP55263 362 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 CDH4P55283 916 aa15□□□□□ -0.01
VRK3-206ENST00000594090 TBX2Q13207 712 aaPredicted RBP15□□□□□ -0.01
VRK3-206ENST00000594090 PTPRNQ16849 979 aa15□□□□□ -0.01
VRK3-206ENST00000594090 FNDC3BQ53EP0 1204 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 ALFQ53S48 1182 aa15□□□□□ -0.01
VRK3-206ENST00000594090 SERPINA13PQ6UXR4 307 aa15□□□□□ -0.01
VRK3-206ENST00000594090 TMC6Q7Z403 805 aa15□□□□□ -0.01
VRK3-206ENST00000594090 CCDC185Q8N715 623 aa15□□□□□ -0.01
VRK3-206ENST00000594090 SUMF1Q8NBK3 374 aa15□□□□□ -0.01
VRK3-206ENST00000594090 HMGB4Q8WW32 186 aa15□□□□□ -0.01
VRK3-206ENST00000594090 GAB3Q8WWW8 586 aa15□□□□□ -0.01
VRK3-206ENST00000594090 NTAN1Q96AB6 310 aa15□□□□□ -0.01
VRK3-206ENST00000594090 TTC17Q96AE7 1141 aa15□□□□□ -0.01
VRK3-206ENST00000594090 BCCIPQ9P287 314 aaKnown RBP eCLIP15□□□□□ -0.01
VRK3-206ENST00000594090 MYO1AQ9UBC5 1043 aa15□□□□□ -0.01
VRK3-206ENST00000594090 NENFQ9UMX5 172 aa15□□□□□ -0.01
VRK3-206ENST00000594090 SMG5Q9UPR3 1016 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 CKAP5Q14008 2032 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15□□□□□ -0.01
VRK3-206ENST00000594090 TMEM191CA6NGB0 347 aa15□□□□□ -0.01
VRK3-206ENST00000594090 DRGXA6NNA5 263 aa15□□□□□ -0.01
VRK3-206ENST00000594090 RPP40O75818 363 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 MOCS3O95396 460 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ASLP04424 464 aa15□□□□□ -0.01
VRK3-206ENST00000594090 DESP17661 470 aa15□□□□□ -0.01
VRK3-206ENST00000594090 GABRG2P18507 467 aa15□□□□□ -0.01
VRK3-206ENST00000594090 MZF1P28698 734 aaPredicted RBP15□□□□□ -0.01
VRK3-206ENST00000594090 OXCT1P55809 520 aa15□□□□□ -0.01
VRK3-206ENST00000594090 NRG1Q02297 640 aaPredicted RBP15□□□□□ -0.01
VRK3-206ENST00000594090 ZNF252P-AS1Q0IIN9 211 aa15□□□□□ -0.01
VRK3-206ENST00000594090 SCAPQ12770 1279 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ZNF177Q13360 481 aaPredicted RBP15□□□□□ -0.01
VRK3-206ENST00000594090 MAPK8IP2Q13387 824 aaPredicted RBP15□□□□□ -0.01
VRK3-206ENST00000594090 SLC12A1Q13621 1099 aa15□□□□□ -0.01
VRK3-206ENST00000594090 STARD3Q14849 445 aa15□□□□□ -0.01
VRK3-206ENST00000594090 PLEKHG6Q3KR16 790 aa15□□□□□ -0.01
VRK3-206ENST00000594090 MANEALQ5VSG8 457 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ALKBH5Q6P6C2 394 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 CNGA4Q8IV77 575 aa15□□□□□ -0.01
VRK3-206ENST00000594090 APCDD1Q8J025 514 aa15□□□□□ -0.01
VRK3-206ENST00000594090 OR52K2Q8NGK3 314 aa15□□□□□ -0.01
VRK3-206ENST00000594090 FNIP1Q8TF40 1166 aa15□□□□□ -0.01
VRK3-206ENST00000594090 ERLEC1Q96DZ1 483 aa15□□□□□ -0.01
VRK3-206ENST00000594090 TRIM7Q9C029 511 aa15□□□□□ -0.01
VRK3-206ENST00000594090 TMEM245Q9H330 911 aa15□□□□□ -0.01
VRK3-206ENST00000594090 MRPL47Q9HD33 250 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 ZNHIT6Q9NWK9 470 aaKnown RBP15□□□□□ -0.01
VRK3-206ENST00000594090 DOCK4Q8N1I0 1966 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 DMDP11532 3685 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 SSU72P8A0A1W2PR75 194 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 SRGAP2O75044 1071 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 HLA-EP13747 358 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 NDUFV2P19404 249 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 PSMA2P25787 234 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 SIM2Q14190 667 aaPredicted RBP14.99□□□□□ -0.01
VRK3-206ENST00000594090 TSR1Q2NL82 804 aaKnown RBP14.99□□□□□ -0.01
VRK3-206ENST00000594090 CCDC122Q5T0U0 273 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 PRR23BQ6ZRT6 265 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 TFAP2DQ7Z6R9 452 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 SLFN11Q7Z7L1 901 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 ALYREFQ86V81 257 aaKnown RBP14.99□□□□□ -0.01
VRK3-206ENST00000594090 ALG14Q96F25 216 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 MYO19Q96H55 970 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 ZYG11BQ9C0D3 744 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 THAP2Q9H0W7 228 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 OSBPL2Q9H1P3 480 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 MPP6Q9NZW5 540 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 OR12D3Q9UGF7 316 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 PLA2G4CQ9UP65 541 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 TBC1D30Q9Y2I9 924 aa14.99□□□□□ -0.01
VRK3-206ENST00000594090 AKR1B15C9JRZ8 316 aaPredicted RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 FAM72CH0Y354 149 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 SYNCRIPO60506 623 aaKnown RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 EPHX1P07099 455 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 HOXD11P31277 338 aaPredicted RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 CTSOP43234 321 aaPredicted RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 NUMBP49757 651 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 ZNF75DP51815 510 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 PLK1P53350 603 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 AIF1P55008 147 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 GFPT1Q06210 699 aaPredicted RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 SLC18A3Q16572 532 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 ASTE1Q2TB18 679 aaPredicted RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 USP39Q53GS9 565 aaKnown RBP14.98□□□□□ -0.01
VRK3-206ENST00000594090 FAM72AQ5TYM5 149 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 FAM72DQ6L9T8 149 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 SCYL2Q6P3W7 929 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 CEP68Q76N32 757 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 FAM72BQ86X60 149 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 PGBD3Q8N328 593 aa14.98□□□□□ -0.01
VRK3-206ENST00000594090 ZNF366Q8N895 744 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms