RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 C6P13671 934 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 PDCP20941 246 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 SFNP31947 248 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 HOXD12P35452 270 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 SUMO1P63165 101 aaKnown RBP8.34□□□□□ -1.07
SMAD4-209ENST00000589941 PTH1RQ03431 593 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 GRIK2Q13002 908 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 TRDNQ13061 729 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 SART3Q15020 963 aaKnown RBP8.34□□□□□ -1.07
SMAD4-209ENST00000589941 ANKRD1Q15327 319 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 UPP1Q16831 310 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 CCDC157Q569K6 752 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 HIST2H2BCQ6DN03 193 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 RALYLQ86SE5 291 aaKnown RBP8.34□□□□□ -1.07
SMAD4-209ENST00000589941 MICU3Q86XE3 530 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 HACE1Q8IYU2 909 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 THAP3Q8WTV1 239 aaPredicted RBP8.34□□□□□ -1.07
SMAD4-209ENST00000589941 TSPAN17Q96FV3 270 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 PEX11GQ96HA9 241 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 MRFAP1L1Q96HT8 127 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 PGLYRP2Q96PD5 576 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 PPP1R10Q96QC0 940 aaKnown RBP8.34□□□□□ -1.07
SMAD4-209ENST00000589941 JAM3Q9BX67 310 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 TEKT3Q9BXF9 490 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 GPR88Q9GZN0 384 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 CD93Q9NPY3 652 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 DIAPH3Q9NSV4 1193 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 MMP17Q9ULZ9 603 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 CYP46A1Q9Y6A2 500 aa8.34□□□□□ -1.07
SMAD4-209ENST00000589941 AHCTF1Q8WYP5 2266 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CREBBPQ92793 2442 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 SPENQ96T58 3664 aaKnown RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 TCAF2A6NFQ2 919 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 NPIPB6E9PJ23 425 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 H7BY64 318 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 K7EQS6 105 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 SGK1O00141 431 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 N4BP3O15049 544 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 PLXNA2O75051 1894 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 HLA-EP13747 358 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 PSMA5P28066 241 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 GABRR2P28476 465 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CIITAP33076 1130 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 IL12RB1P42701 662 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 GNAQP50148 359 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 SLC14A1Q13336 389 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 SSPNQ14714 243 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 SMAD1Q15797 465 aaKnown RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CRY1Q16526 586 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 ME3Q16798 604 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 ADCK5Q3MIX3 580 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 FBXO43Q4G163 708 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CTXN3Q4LDR2 81 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 MROH9Q5TGP6 573 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CREB3L3Q68CJ9 461 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 TPGS2Q68CL5 300 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 DHRS13Q6UX07 377 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 NOSTRINQ8IVI9 506 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 ALLCQ8N6M5 410 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 NCOA7Q8NI08 942 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 SETD7Q8WTS6 366 aaKnown RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 HMGB4Q8WW32 186 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 ANKRD7Q92527 254 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 USP13Q92995 863 aaPredicted RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CD101Q93033 1021 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 NXPE2Q96DL1 559 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CEP170P1Q96L14 293 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 LRRC2Q9BYS8 371 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 PDZD7Q9H5P4 517 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 CPNE5Q9HCH3 593 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 DDX19AQ9NUU7 478 aaKnown RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 BARHL2Q9NY43 387 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 AFF4Q9UHB7 1163 aaKnown RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 IL17BQ9UHF5 180 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 NUDT5Q9UKK9 219 aa8.33□□□□□ -1.08
SMAD4-209ENST00000589941 RBM8AQ9Y5S9 174 aaKnown RBP8.33□□□□□ -1.08
SMAD4-209ENST00000589941 A0A1B0GUA9 196 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 CAPN8A6NHC0 703 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 GOLGA6L6A8MZA4 724 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 SLC27A2O14975 620 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 PRC1O43663 620 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 GP1BBP13224 206 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 NMT1P30419 496 aaKnown RBP8.32□□□□□ -1.08
SMAD4-209ENST00000589941 GPR85P60893 370 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 KRT85P78386 507 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 NFKB2Q00653 900 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 BNC1Q01954 994 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 ZNF33AQ06730 810 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 PLEKHG6Q3KR16 790 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 SGMS1Q86VZ5 419 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 DCP2Q8IU60 420 aaKnown RBP8.32□□□□□ -1.08
SMAD4-209ENST00000589941 CCDC83Q8IWF9 413 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 STKLD1Q8NE28 680 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 CEP76Q8TAP6 659 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 ALG3Q92685 438 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 JAKMIP1Q96N16 626 aaKnown RBP8.32□□□□□ -1.08
SMAD4-209ENST00000589941 RIT2Q99578 217 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 ZFYVE21Q9BQ24 234 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 SLC46A2Q9BY10 475 aa8.32□□□□□ -1.08
SMAD4-209ENST00000589941 SCAND2PQ9GZW5 306 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms