RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 METTL3Q86U44 580 aaKnown RBP24.65■■□□□ 1.54
SHMT1-206ENST00000579558 LUZP1Q86V48 1076 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 CACUL1Q86Y37 369 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 DEFB119Q8N690 84 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 NETO1Q8TDF5 533 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 BAP1Q92560 729 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 PIGKQ92643 395 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 ANLNQ9NQW6 1124 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 USP36Q9P275 1121 aaKnown RBP24.65■■□□□ 1.54
SHMT1-206ENST00000579558 MYO6Q9UM54 1294 aa24.65■■□□□ 1.54
SHMT1-206ENST00000579558 DNAH14Q0VDD8 3507 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 TNRC6BQ9UPQ9 1833 aaKnown RBP24.64■■□□□ 1.54
SHMT1-206ENST00000579558 A0A1W2PQC6 194 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 ACADMP11310 421 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 PDGFRAP16234 1089 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 RDXP35241 583 aaKnown RBP24.64■■□□□ 1.54
SHMT1-206ENST00000579558 IRAK1P51617 712 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 PTP4A2Q12974 167 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 SLC12A1Q13621 1099 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 TCEAL6Q6IPX3 200 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 PHF13Q86YI8 300 aaPredicted RBP24.64■■□□□ 1.54
SHMT1-206ENST00000579558 APCDD1Q8J025 514 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 TCEAL3Q969E4 200 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 ITM2CQ9NQX7 267 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 SUN2Q9UH99 717 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 ERVW-1Q9UQF0 538 aa24.64■■□□□ 1.54
SHMT1-206ENST00000579558 CEP192Q8TEP8 1941 aa24.64■■□□□ 1.53
SHMT1-206ENST00000579558 I6L893 689 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-206ENST00000579558 NDUFS2O75306 463 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 CALB1P05937 261 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 CD6P30203 668 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 CTSOP43234 321 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-206ENST00000579558 OXCT1P55809 520 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 ATP11AP98196 1134 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 ZSCAN23Q3MJ62 389 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 CXorf57Q6NSI4 855 aaKnown RBP24.63■■□□□ 1.53
SHMT1-206ENST00000579558 BNIPLQ7Z465 357 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 RXFP2Q8WXD0 754 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 MYO19Q96H55 970 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 MRGPRX3Q96LB0 322 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 FBRSQ9HAH7 460 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 PRSS16Q9NQE7 514 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 SNX10Q9Y5X0 201 aa24.63■■□□□ 1.53
SHMT1-206ENST00000579558 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 LRRC53A6NM62 1247 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 GJB6O95452 261 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 SRPRAP08240 638 aaKnown RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 MZF1P28698 734 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 SDC4P31431 198 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 TPMTP51580 245 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 GSCP56915 257 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 ECT2LQ008S8 904 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 ZNF177Q13360 481 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 SKOR2Q2VWA4 1001 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 C5orf22Q49AR2 442 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 RNF219Q5W0B1 726 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-206ENST00000579558 IRF2BP2Q7Z5L9 587 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 FAM131BQ86XD5 332 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 JOSD2Q8TAC2 188 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 SELENOOQ9BVL4 669 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 MTG2Q9H4K7 406 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 TMPRSS4Q9NRS4 437 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 RXFP3Q9NSD7 469 aa24.62■■□□□ 1.53
SHMT1-206ENST00000579558 ATXN2Q99700 1313 aaKnown RBP24.61■■□□□ 1.53
SHMT1-206ENST00000579558 KHNYNO15037 678 aaKnown RBP24.61■■□□□ 1.53
SHMT1-206ENST00000579558 CLDN11O75508 207 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 KRT3P12035 628 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 ITPKAP23677 461 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 DPP6P42658 865 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 NUMBP49757 651 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 FANCCQ00597 558 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 ZNF33AQ06730 810 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 NR1I3Q14994 352 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 ASIC2Q16515 512 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 CDO1Q16878 200 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 C15orf59Q2T9L4 293 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-206ENST00000579558 ACBD5Q5T8D3 534 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-206ENST00000579558 LRRC31Q6UY01 552 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 MON1BQ7L1V2 547 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 DGLUCYQ7Z3D6 616 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 SYT12Q8IV01 421 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 KDM1BQ8NB78 822 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 TOE1Q96GM8 510 aaKnown RBP24.61■■□□□ 1.53
SHMT1-206ENST00000579558 RTKNQ9BST9 563 aa24.61■■□□□ 1.53
SHMT1-206ENST00000579558 C2CD4BA6NLJ0 364 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 PATE3B3GLJ2 98 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 GOLGA6L19H0YKK7 550 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 ENDOD1O94919 500 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 TNFAIP3P21580 790 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 OXTRP30559 389 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 PLK1P53350 603 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 CDH4P55283 916 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 C1QBPQ07021 282 aaKnown RBP24.6■■□□□ 1.53
SHMT1-206ENST00000579558 HNRNPA1L2Q32P51 320 aaKnown RBP24.6■■□□□ 1.53
SHMT1-206ENST00000579558 CCDC14Q49A88 953 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 SLC41A1Q8IVJ1 513 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 ZNF683Q8IZ20 524 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 C3orf20Q8ND61 904 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 RPL10LQ96L21 214 aaKnown RBP24.6■■□□□ 1.53
SHMT1-206ENST00000579558 C1orf74Q96LT6 269 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms