RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 UBE3AQ05086 875 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 BIKQ13323 160 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SIM2Q14190 667 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PDCD2Q16342 344 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 HIF1AQ16665 826 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TSGA10IPQ3SY00 556 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 DGKKQ5KSL6 1271 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 AGAP9Q5VTM2 703 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 IRGCQ6NXR0 463 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CYP20A1Q6UW02 462 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PACS1Q6VY07 963 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 STOX1Q6ZVD7 989 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 GLT6D1Q7Z4J2 308 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 P4HA3Q7Z4N8 544 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PRUNE1Q86TP1 453 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 GKN2Q86XP6 184 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TDHQ8IZJ6 230 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SIX5Q8N196 739 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 LRRC52Q8N7C0 313 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PHOSPHO2Q8TCD6 241 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RXFP2Q8WXD0 754 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ELMO1Q92556 727 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 VPS33AQ96AX1 596 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 HHIPL1Q96JK4 782 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CYTH2Q99418 400 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TBCBQ99426 244 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FICDQ9BVA6 458 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ZYG11BQ9C0D3 744 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF576Q9H609 170 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF556Q9HAH1 456 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 GDF3Q9NR23 364 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 GKN1Q9NS71 199 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 IMP3Q9NV31 184 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 MRGBPQ9NV56 204 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 GID8Q9NWU2 228 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PLK2Q9NYY3 685 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 LIMD1Q9UGP4 676 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 VAV3Q9UKW4 847 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CDH7Q9ULB5 785 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RNF112Q9ULX5 631 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 DMTF1Q9Y222 760 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KIF1AQ12756 1690 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 NRXN3Q9Y4C0 1643 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ASTN2O75129 1339 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SALL3Q9BXA9 1300 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 A0A087WUV0 522 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 WDR91A4D1P6 747 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RASSF10A6NK89 507 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 H3BUI4 141 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CLDN4O14493 209 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CTIFO43310 598 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FKBP9O95302 570 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 NTRK1P04629 796 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CA3P07451 260 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TYMPP19971 482 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 IGFALSP35858 605 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PER3P56645 1201 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 IRF5Q13568 498 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TOB2Q14106 344 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 LPAL2Q16609 132 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PLEKHG6Q3KR16 790 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 DPCR1Q3MIW9 517 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 HSDL1Q3SXM5 330 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CERCAMQ5T4B2 595 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TEDDM1Q5T9Z0 273 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RASIP1Q5U651 963 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF776Q68DI1 518 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FBXO38Q6PIJ6 1188 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC36A4Q6YBV0 504 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TPRG1Q6ZUI0 275 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FKBP9P1Q75LS8 142 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TRMT10CQ7L0Y3 403 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 LRRC49Q8IUZ0 686 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 DHX40Q8IX18 779 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KRT222Q8N1A0 295 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PDCD7Q8N8D1 485 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ARL14EPQ8N8R7 260 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RHBDD1Q8TEB9 315 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RIT1Q92963 219 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CD101Q93033 1021 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 MRPL48Q96GC5 212 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 NAT9Q9BTE0 207 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FAIM2Q9BWQ8 316 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 COL25A1Q9BXS0 654 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 AP1M1Q9BXS5 423 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TKTL2Q9H0I9 626 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RSPH9Q9H1X1 276 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TASP1Q9H6P5 420 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 MORF4L1Q9UBU8 362 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ASF1AQ9Y294 204 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 DERAQ9Y315 318 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CPQQ9Y646 472 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 GLI3P10071 1580 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KIAA0100Q14667 2235 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TRBV23OR9-2A0A075B6M9 112 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 A0A0B4J269 797 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 ANGPT2O15123 496 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC37A4O43826 429 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FOXD2O60548 495 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CLEC3AO75596 197 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms