RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 GABRB3P28472 473 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 ALDH1B1P30837 517 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 DGKQP52824 942 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 GPC5P78333 572 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 TXNL4AP83876 142 aaKnown RBP4.66□□□□□ -1.66
NUP88-202ENST00000570937 NEXNQ0ZGT2 675 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 HLFQ16534 295 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 TWISTNBQ3B726 338 aaPredicted RBP4.66□□□□□ -1.66
NUP88-202ENST00000570937 FAXCQ5TGI0 409 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 GRHL2Q6ISB3 625 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 PRR5LQ6MZQ0 368 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 VSTM1Q6UX27 236 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 DCDC5Q6ZRR9 648 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 ZNF34Q8IZ26 560 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 FSTL5Q8N475 847 aaPredicted RBP4.66□□□□□ -1.66
NUP88-202ENST00000570937 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.66□□□□□ -1.66
NUP88-202ENST00000570937 ABHD5Q8WTS1 349 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 ZNF622Q969S3 477 aaKnown RBP eCLIP4.66□□□□□ -1.66
NUP88-202ENST00000570937 MASTLQ96GX5 879 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 SH2D3AQ9BRG2 576 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 UTP14AQ9BVJ6 771 aaKnown RBP4.66□□□□□ -1.66
NUP88-202ENST00000570937 PRSS22Q9GZN4 317 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 ARNT2Q9HBZ2 717 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 PDGFCQ9NRA1 345 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 TMOD4Q9NZQ9 345 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 SCAF8Q9UPN6 1271 aaKnown RBP4.66□□□□□ -1.66
NUP88-202ENST00000570937 C4AP0C0L4 1744 aa4.66□□□□□ -1.66
NUP88-202ENST00000570937 KDM3BQ7LBC6 1761 aa4.65□□□□□ -1.66
NUP88-202ENST00000570937 ATP10DQ9P241 1426 aa4.65□□□□□ -1.66
NUP88-202ENST00000570937 RASA4BC9J798 803 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 RASA4O43374 803 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 PRC1O43663 620 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 CCNT2O60583 730 aaKnown RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 FGF18O76093 207 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 EGR1P18146 543 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 GPTP24298 496 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 CHRNA5P30532 468 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 ZNF81P51508 661 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 GPS1Q13098 491 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 KCNJ12Q14500 433 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 KCNB1Q14721 858 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 MFSD13AQ14CX5 517 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 KRT24Q2M2I5 525 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 SLC5A9Q2M3M2 681 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 ARL13BQ3SXY8 428 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 AASDHQ4L235 1098 aaPredicted RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 LRCH2Q5VUJ6 765 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 CCSAPQ6IQ19 270 aaPredicted RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 ZNF425Q6IV72 752 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 HIBCHQ6NVY1 386 aaPredicted RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 MIS18BP1Q6P0N0 1132 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 KSR2Q6VAB6 950 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 CCDC150Q8NCX0 1101 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 SMG7Q92540 1137 aaKnown RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 RBM17Q96I25 401 aaKnown RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 HIC2Q96JB3 615 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 SNX27Q96L92 541 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 ZNF778Q96MU6 729 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 FAM118BQ9BPY3 351 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 EFHD1Q9BUP0 239 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 CINPQ9BW66 212 aaPredicted RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 SLC29A3Q9BZD2 475 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 TMEM8AQ9HCN3 771 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 GJB4Q9NTQ9 266 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 TRMT112Q9UI30 125 aaKnown RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 MAFFQ9ULX9 164 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 SH3TC1Q8TE82 1336 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 FANCIQ9NVI1 1328 aa4.65□□□□□ -1.67
NUP88-202ENST00000570937 IBTKQ9P2D0 1353 aaPredicted RBP4.65□□□□□ -1.67
NUP88-202ENST00000570937 PXDNLA1KZ92 1463 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 CLIC1O00299 241 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 FCHO1O14526 889 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 CA12O43570 354 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 PRAMEF2O60811 474 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 MBPP02686 304 aaPredicted RBP4.64□□□□□ -1.67
NUP88-202ENST00000570937 KRT18P05783 430 aaKnown RBP4.64□□□□□ -1.67
NUP88-202ENST00000570937 MYL1P05976 194 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 IDEP14735 1019 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 TNFSF4P23510 183 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 TBX4P57082 545 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 CCDC15Q0P6D6 951 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 ATP1A4Q13733 1029 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.64□□□□□ -1.67
NUP88-202ENST00000570937 FAM209BQ5JX69 171 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 SLC10A5Q5PT55 438 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 SUSD4Q5VX71 490 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 RAP1GAP2Q684P5 730 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 C11orf87Q6NUJ2 197 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 TLDC1Q6P9B6 456 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 RANBP10Q6VN20 620 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 CCDC28AQ8IWP9 274 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 TSPYL6Q8N831 410 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 FAM71DQ8N9W8 422 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 RPL36ALQ969Q0 106 aaKnown RBP4.64□□□□□ -1.67
NUP88-202ENST00000570937 HS6ST2Q96MM7 605 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 VPS45Q9NRW7 570 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 ZMYND8Q9ULU4 1186 aaPredicted RBP4.64□□□□□ -1.67
NUP88-202ENST00000570937 MAN2B2Q9Y2E5 1009 aa4.64□□□□□ -1.67
NUP88-202ENST00000570937 LAMB4A4D0S4 1761 aa4.63□□□□□ -1.67
NUP88-202ENST00000570937 PI4KAP2A4QPH2 592 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms