RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LINC00301Q8NCQ3 95 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 IFI44Q8TCB0 444 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 SGF29Q96ES7 293 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 ATXN7L3BQ96GX2 97 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 APOLD1Q96LR9 279 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 DUSP23Q9BVJ7 150 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 DUSP16Q9BY84 665 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 IMPG2Q9BZV3 1241 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 CUEDC2Q9H467 287 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 STIM2Q9P246 746 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 HMGXB4Q9UGU5 601 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 PLXNA2O75051 1894 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 CPED1A4D0V7 1026 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 ENO4A6NNW6 628 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 EIF3DO15371 548 aaKnown RBP eCLIP11.49□□□□□ -0.57
VPS53-207ENST00000570510 PPFIA2O75334 1257 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 RPN1P04843 607 aaKnown RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 ITGB2P05107 769 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 FAM87AP0C7U9 286 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 CASP4P49662 377 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 SNRPFP62306 86 aaKnown RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 PPP2CBP62714 309 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 PPP2CAP67775 309 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 CLN3Q13286 438 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 SERINC3Q13530 473 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 TRIP4Q15650 581 aaPredicted RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 C9orf64Q5T6V5 341 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 RBM44Q6ZP01 1051 aaKnown RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 KIAA0907Q7Z7F0 614 aaPredicted RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 ZC3H3Q8IXZ2 948 aaKnown RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 TPCN2Q8NHX9 752 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 WDR36Q8NI36 951 aaKnown RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 TAF4BQ92750 862 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 CALN1Q9BXU9 219 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 MAGEF1Q9HAY2 307 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 UCKL1Q9NWZ5 548 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 NLGN3Q9NZ94 848 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 FBXO2Q9UK22 296 aaPredicted RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 ATXN7L1Q9ULK2 861 aaPredicted RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 SSUH2Q9Y2M2 353 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 HBS1LQ9Y450 684 aaKnown RBP11.49□□□□□ -0.57
VPS53-207ENST00000570510 PCDHGA8Q9Y5G5 932 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 USP3Q9Y6I4 520 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 DOPEY2Q9Y3R5 2298 aa11.49□□□□□ -0.57
VPS53-207ENST00000570510 TEX15Q9BXT5 2789 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 TTC34A8MYJ7 566 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 LATO43561 262 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 F13A1P00488 732 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CD58P19256 250 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CSKP41240 450 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 PIK3CAP42336 1068 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 SLC11A2P49281 568 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 KCNMA1Q12791 1236 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CDH18Q13634 790 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 LINC00303Q3SY05 128 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 MPP7Q5T2T1 576 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 DSG4Q86SJ6 1040 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 JAMLQ86YT9 394 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 STK40Q8N2I9 435 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CARNMT1Q8N4J0 409 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 AADATQ8N5Z0 425 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CCDC150Q8NCX0 1101 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 ARRDC3Q96B67 414 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 HEXIM2Q96MH2 286 aaKnown RBP11.48□□□□□ -0.57
VPS53-207ENST00000570510 IPO9Q96P70 1041 aaKnown RBP11.48□□□□□ -0.57
VPS53-207ENST00000570510 MYOCQ99972 504 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 KDM4CQ9H3R0 1056 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 SYNDIG1Q9H7V2 258 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 KLHL11Q9NVR0 708 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 NCKIPSDQ9NZQ3 722 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 SEPT10Q9P0V9 454 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 SFMBT1Q9UHJ3 866 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CYTH4Q9UIA0 394 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 CLIC4Q9Y696 253 aa11.48□□□□□ -0.57
VPS53-207ENST00000570510 UBR5O95071 2799 aaPredicted RBP11.48□□□□□ -0.57
VPS53-207ENST00000570510 AHCTF1Q8WYP5 2266 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 TP53BP1Q12888 1972 aaPredicted RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 SPTLC2O15270 562 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 IRAK2O43187 625 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 CUTAO60888 179 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 RNGTTO60942 597 aaKnown RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 RTN2O75298 545 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 LATS1O95835 1130 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 ZBED1O96006 694 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 SRPRAP08240 638 aaKnown RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 ZNF18P17022 549 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 CR2P20023 1033 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 TGM2P21980 687 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 MLLT3P42568 568 aaPredicted RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 TKTL1P51854 596 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 AMPD3Q01432 767 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 ZNF177Q13360 481 aaPredicted RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 ELAVL3Q14576 367 aaKnown RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 STK38Q15208 465 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 CDKN3Q16667 212 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 FAM46CQ5VWP2 391 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 RFWD3Q6PCD5 774 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 C14orf80Q86SX3 495 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 PDILTQ8N807 584 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms