RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.79■□□□□ 0.28
CLK3-223ENST00000568488 CYTH4Q9UIA0 394 aa16.79■□□□□ 0.28
CLK3-223ENST00000568488 ERVW-1Q9UQF0 538 aa16.79■□□□□ 0.28
CLK3-223ENST00000568488 EDDM13A0A1B0GTR0 161 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 C10orf142B7Z368 130 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 TERTO14746 1132 aaKnown RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 MSI1O43347 362 aaKnown RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 LATS1O95835 1130 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 CENPBP07199 599 aaPredicted RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 ALPPL2P10696 532 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 CTSOP43234 321 aaPredicted RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 ISXQ2M1V0 245 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 ZNF557Q8N988 423 aaPredicted RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 FIBINQ8TAL6 211 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 APOLD1Q96LR9 279 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 SLC46A1Q96NT5 459 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 UBXN6Q9BZV1 441 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 SLCO3A1Q9UIG8 710 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 INTS6Q9UL03 887 aaKnown RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 DMTF1Q9Y222 760 aa16.78■□□□□ 0.28
CLK3-223ENST00000568488 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.78■□□□□ 0.28
CLK3-223ENST00000568488 UBR5O95071 2799 aaPredicted RBP16.77■□□□□ 0.28
CLK3-223ENST00000568488 CASP1P29466 404 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 DUSP3P51452 185 aaPredicted RBP16.77■□□□□ 0.28
CLK3-223ENST00000568488 SLC8A3P57103 927 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 ARL13BQ3SXY8 428 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 RAB41Q5JT25 222 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 MPP7Q5T2T1 576 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 RNF219Q5W0B1 726 aaPredicted RBP16.77■□□□□ 0.28
CLK3-223ENST00000568488 MMS22LQ6ZRQ5 1243 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 CCDC117Q8IWD4 279 aaPredicted RBP16.77■□□□□ 0.28
CLK3-223ENST00000568488 GOLGA5Q8TBA6 731 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 DHX58Q96C10 678 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 ATXN7L3BQ96GX2 97 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 LMLNQ96KR4 655 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 MYOCQ99972 504 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 CAAP1Q9H8G2 361 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 LRRC4Q9HBW1 653 aa16.77■□□□□ 0.28
CLK3-223ENST00000568488 APOBEC3GQ9HC16 384 aaKnown RBP16.77■□□□□ 0.28
CLK3-223ENST00000568488 PRAMEF26H0Y7S4 382 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 RTN2O75298 545 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 GP1BAP07359 652 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 SRPRAP08240 638 aaKnown RBP16.76■□□□□ 0.27
CLK3-223ENST00000568488 THEGLP0DJG4 465 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 MZF1P28698 734 aaPredicted RBP16.76■□□□□ 0.27
CLK3-223ENST00000568488 SLC6A4P31645 630 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 SLC11A2P49281 568 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 KCNMA1Q12791 1236 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 ARID5BQ14865 1188 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 PITRM1Q5JRX3 1037 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 BSPRYQ5W0U4 402 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 PM20D1Q6GTS8 502 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 UNC13DQ70J99 1090 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 KDM1BQ8NB78 822 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 IFI44Q8TCB0 444 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 RPL10LQ96L21 214 aaKnown RBP16.76■□□□□ 0.27
CLK3-223ENST00000568488 IPO9Q96P70 1041 aaKnown RBP16.76■□□□□ 0.27
CLK3-223ENST00000568488 CCNL2Q96S94 520 aaPredicted RBP16.76■□□□□ 0.27
CLK3-223ENST00000568488 BLZF1Q9H2G9 400 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 EVA1BQ9NVM1 165 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 KLHL11Q9NVR0 708 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 ANKMY1Q9P2S6 941 aa16.76■□□□□ 0.27
CLK3-223ENST00000568488 A0A1W2PNU3 283 aaPredicted RBP16.75■□□□□ 0.27
CLK3-223ENST00000568488 TYW5A2RUC4 315 aaKnown RBP16.75■□□□□ 0.27
CLK3-223ENST00000568488 MOCS3O95396 460 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 GIMD1P0DJR0 217 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 DRD3P35462 400 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 NUDT1P36639 197 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 METAP1P53582 386 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 ECT2LQ008S8 904 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 CLN3Q13286 438 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 CDH18Q13634 790 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 RABEP1Q15276 862 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 E2F4Q16254 413 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 LINC00303Q3SY05 128 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 SETMARQ53H47 684 aaPredicted RBP16.75■□□□□ 0.27
CLK3-223ENST00000568488 FSCBQ5H9T9 825 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 IGF2-ASQ6U949 168 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 BHLHA9Q7RTU4 235 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 ARL14Q8N4G2 192 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 HJURPQ8NCD3 748 aaPredicted RBP16.75■□□□□ 0.27
CLK3-223ENST00000568488 KLK6Q92876 244 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 PTPRN2Q92932 1015 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 C7orf25Q9BPX7 421 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 NIF3L1Q9GZT8 377 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 KDM4CQ9H3R0 1056 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 CUEDC2Q9H467 287 aa16.75■□□□□ 0.27
CLK3-223ENST00000568488 BOD1L1Q8NFC6 3051 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 DOPEY2Q9Y3R5 2298 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 YJEFN3A6XGL0 299 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 E7ENQ6 273 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 TULP2O00295 520 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 IKBKBO14920 756 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 SLC31A1O15431 190 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 IRAK2O43187 625 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 SUV39H1O43463 412 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 ACSL4O60488 711 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 PIAS2O75928 621 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 CD2BP2O95400 341 aaKnown RBP16.74■□□□□ 0.27
CLK3-223ENST00000568488 TGM2P21980 687 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms