RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 STARD13Q9Y3M8 1113 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 CACNA1HO95180 2353 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 CHD5Q8TDI0 1954 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 TYW5A2RUC4 315 aaKnown RBP20.13■□□□□ 0.81
CLN3-225ENST00000566824 WASH3PC4AMC7 463 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 MYO1FO00160 1098 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 PROSCO94903 275 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 PCK1P35558 622 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 CSKP41240 450 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 CTSOP43234 321 aaPredicted RBP20.13■□□□□ 0.81
CLN3-225ENST00000566824 PIGHQ14442 188 aaPredicted RBP20.13■□□□□ 0.81
CLN3-225ENST00000566824 EFHC2Q5JST6 749 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 KCNT1Q5JUK3 1230 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 TTC39BQ5VTQ0 682 aaPredicted RBP20.13■□□□□ 0.81
CLN3-225ENST00000566824 LRRC31Q6UY01 552 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 ZNF513Q8N8E2 541 aaPredicted RBP20.13■□□□□ 0.81
CLN3-225ENST00000566824 TXNDC5Q8NBS9 432 aaKnown RBP20.13■□□□□ 0.81
CLN3-225ENST00000566824 CYB5D2Q8WUJ1 264 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 RFFLQ8WZ73 363 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 ALG14Q96F25 216 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 CIPCQ9C0C6 399 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 ZWILCHQ9H900 591 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 SALL4Q9UJQ4 1053 aa20.13■□□□□ 0.81
CLN3-225ENST00000566824 PRPSAP2O60256 369 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 MTA2O94776 668 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 TDGF1P13385 188 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 CDH4P55283 916 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 TAS2R40P59535 323 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 MRPS21P82921 87 aaKnown RBP20.12■□□□□ 0.81
CLN3-225ENST00000566824 SLC25A11Q02978 314 aaKnown RBP20.12■□□□□ 0.81
CLN3-225ENST00000566824 DMWDQ09019 674 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 MESDQ14696 234 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 TCEAL1Q15170 157 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 ANGPT1Q15389 498 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 SPA17Q15506 151 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 SMTNL2Q2TAL5 461 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 PREPLQ4J6C6 727 aaPredicted RBP20.12■□□□□ 0.81
CLN3-225ENST00000566824 ATP13A4Q4VNC1 1196 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 PITRM1Q5JRX3 1037 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 ERMARDQ5T6L9 678 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 MBLAC2Q68D91 279 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 TMEM92Q6UXU6 159 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 ZYG11BQ9C0D3 744 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 LACRTQ9GZZ8 138 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 DHX35Q9H5Z1 703 aaKnown RBP20.12■□□□□ 0.81
CLN3-225ENST00000566824 PRMT8Q9NR22 394 aaPredicted RBP20.12■□□□□ 0.81
CLN3-225ENST00000566824 CACNA2D2Q9NY47 1150 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 PPARGC1AQ9UBK2 798 aaKnown RBP20.12■□□□□ 0.81
CLN3-225ENST00000566824 TBC1D30Q9Y2I9 924 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 OR51B4Q9Y5P0 310 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 DUSP10Q9Y6W6 482 aa20.12■□□□□ 0.81
CLN3-225ENST00000566824 NUP205Q92621 2012 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.11■□□□□ 0.81
CLN3-225ENST00000566824 K7ESF4 209 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 CREB3O43889 395 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 CLDN11O75508 207 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 COL9A1P20849 921 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 L1CAMP32004 1257 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 MRE11P49959 708 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 GSDMDP57764 484 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 TCF15Q12870 199 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 ZNF177Q13360 481 aaPredicted RBP20.11■□□□□ 0.81
CLN3-225ENST00000566824 ACAP1Q15027 740 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 PTPRNQ16849 979 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 RNF219Q5W0B1 726 aaPredicted RBP20.11■□□□□ 0.81
CLN3-225ENST00000566824 RWDD4Q6NW29 188 aaKnown RBP20.11■□□□□ 0.81
CLN3-225ENST00000566824 NLRP14Q86W24 1093 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 TBC1D31Q96DN5 1066 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 KIAA1522Q9P206 1035 aaPredicted RBP20.11■□□□□ 0.81
CLN3-225ENST00000566824 MMP17Q9ULZ9 603 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 HYOU1Q9Y4L1 999 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 EML5Q05BV3 1969 aa20.11■□□□□ 0.81
CLN3-225ENST00000566824 LAMTOR5O43504 91 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 RARAP10276 462 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 DESP17661 470 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 IL12RB1P42701 662 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 CXCL12P48061 93 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 AIF1P55008 147 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 CSTF1Q05048 431 aaKnown RBP20.1■□□□□ 0.81
CLN3-225ENST00000566824 DMC1Q14565 340 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 ZNF234Q14588 700 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 PLEKHG6Q3KR16 790 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 MAMSTRQ6ZN01 415 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 RHOT2Q8IXI1 618 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 AHI1Q8N157 1196 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 WFIKKN2Q8TEU8 576 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 HSPH1Q92598 858 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 TTC17Q96AE7 1141 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 GOLPH3Q9H4A6 298 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 THAP10Q9P2Z0 257 aaPredicted RBP20.1■□□□□ 0.81
CLN3-225ENST00000566824 CKAP5Q14008 2032 aa20.1■□□□□ 0.81
CLN3-225ENST00000566824 A0A0D9SEW6 157 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 GOLGA6L6A8MZA4 724 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 H0Y858 1186 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 RHOQP17081 205 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 SSR1P43307 286 aaKnown RBP20.09■□□□□ 0.81
CLN3-225ENST00000566824 PXNP49023 591 aaPredicted RBP20.09■□□□□ 0.81
CLN3-225ENST00000566824 ACBD5Q5T8D3 534 aaPredicted RBP20.09■□□□□ 0.81
CLN3-225ENST00000566824 KIAA1211LQ6NV74 962 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 NUDT18Q6ZVK8 323 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms