RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 UCHL3P15374 230 aa23.2■■□□□ 1.3
CLN3-215ENST00000565236 CTSOP43234 321 aaPredicted RBP23.2■■□□□ 1.3
CLN3-215ENST00000565236 SLC12A1Q13621 1099 aa23.2■■□□□ 1.3
CLN3-215ENST00000565236 ARID5BQ14865 1188 aa23.2■■□□□ 1.3
CLN3-215ENST00000565236 TTC39BQ5VTQ0 682 aaPredicted RBP23.2■■□□□ 1.3
CLN3-215ENST00000565236 DHX40Q8IX18 779 aaKnown RBP23.2■■□□□ 1.3
CLN3-215ENST00000565236 CCAR2Q8N163 923 aaKnown RBP23.2■■□□□ 1.3
CLN3-215ENST00000565236 ZNF397Q8NF99 534 aaPredicted RBP23.2■■□□□ 1.3
CLN3-215ENST00000565236 GANCQ8TET4 914 aa23.2■■□□□ 1.3
CLN3-215ENST00000565236 SNX19Q92543 992 aa23.2■■□□□ 1.3
CLN3-215ENST00000565236 C6orf106Q9H6K1 298 aaPredicted RBP23.2■■□□□ 1.3
CLN3-215ENST00000565236 SCML1Q9UN30 329 aa23.2■■□□□ 1.3
CLN3-215ENST00000565236 A0A1B0GVM2 712 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 TARSL2A2RTX5 802 aaKnown RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 TCAF2A6NFQ2 919 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 TTC34A8MYJ7 566 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 M0QYT0 321 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 SEMA4FO95754 770 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 NNMTP40261 264 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 OXCT1P55809 520 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 RNASE9P60153 205 aaKnown RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 SFSWAPQ12872 951 aaKnown RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 FOXC1Q12948 553 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 GRIK2Q13002 908 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 SLC14A1Q13336 389 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 FBXL22Q6P050 247 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 CIR1Q86X95 450 aaPredicted RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 ENOX1Q8TC92 643 aaKnown RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 RPL10LQ96L21 214 aaKnown RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 RPRD1AQ96P16 312 aaPredicted RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 NAA15Q9BXJ9 866 aaKnown RBP23.19■■□□□ 1.3
CLN3-215ENST00000565236 STK33Q9BYT3 514 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 SGK2Q9HBY8 427 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 TAB2Q9NYJ8 693 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 RRN3Q9NYV6 651 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 SLCO3A1Q9UIG8 710 aa23.19■■□□□ 1.3
CLN3-215ENST00000565236 EDDM13A0A1B0GTR0 161 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 CD59P13987 128 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 PDGFRAP16234 1089 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 CDH5P33151 784 aaPredicted RBP23.18■■□□□ 1.3
CLN3-215ENST00000565236 MATKP42679 507 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 AUHQ13825 339 aaKnown RBP23.18■■□□□ 1.3
CLN3-215ENST00000565236 C9orf64Q5T6V5 341 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 TAF3Q5VWG9 929 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 ERICH1Q86X53 443 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 C18orf8Q96DM3 657 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 GBP4Q96PP9 640 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 PPP1R9BQ96SB3 815 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 VPS16Q9H269 839 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 PABPC3Q9H361 631 aaKnown RBP23.18■■□□□ 1.3
CLN3-215ENST00000565236 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.18■■□□□ 1.3
CLN3-215ENST00000565236 ZBTB32Q9Y2Y4 487 aaPredicted RBP23.18■■□□□ 1.3
CLN3-215ENST00000565236 CEP295Q9C0D2 2601 aa23.18■■□□□ 1.3
CLN3-215ENST00000565236 PAGE1O75459 146 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 TPM2P07951 284 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 GABRB2P47870 512 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 SULT2A1Q06520 285 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 USP30Q70CQ3 517 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 SND1Q7KZF4 910 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLN3-215ENST00000565236 IGSF8Q969P0 613 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 SIK2Q9H0K1 926 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 FBXL12Q9NXK8 326 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 VANGL2Q9ULK5 521 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 STAP1Q9ULZ2 295 aa23.17■■□□□ 1.3
CLN3-215ENST00000565236 ITIH6Q6UXX5 1313 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP23.16■■□□□ 1.3
CLN3-215ENST00000565236 GJB3O75712 270 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 FSBPO95073 299 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 MZF1P28698 734 aaPredicted RBP23.16■■□□□ 1.3
CLN3-215ENST00000565236 NUMBP49757 651 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 PLK1P53350 603 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 SIM1P81133 766 aaPredicted RBP23.16■■□□□ 1.3
CLN3-215ENST00000565236 ZNF177Q13360 481 aaPredicted RBP23.16■■□□□ 1.3
CLN3-215ENST00000565236 CST6Q15828 149 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 LRSAM1Q6UWE0 723 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 MMAAQ8IVH4 418 aaKnown RBP23.16■■□□□ 1.3
CLN3-215ENST00000565236 MSANTD4Q8NCY6 345 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 C1orf216Q8TAB5 229 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 NPY6RQ99463 290 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 WDCPQ9H6R7 721 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 PIGVQ9NUD9 493 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 HS3ST4Q9Y661 456 aa23.16■■□□□ 1.3
CLN3-215ENST00000565236 MAP1BP46821 2468 aaKnown RBP23.16■■□□□ 1.3
CLN3-215ENST00000565236 SPAARA0A1B0GVQ0 90 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 F8VZ95 297 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 LSM8O95777 96 aaKnown RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 F9P00740 461 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 CSNK1EP49674 416 aaKnown RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 STK19P49842 368 aaPredicted RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 SULT1E1P49888 294 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 AFF3P51826 1226 aaKnown RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 CENPCQ03188 943 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 HNRNPDQ14103 355 aaKnown RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 FAM102AQ5T9C2 384 aaPredicted RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 CDKAL1Q5VV42 579 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 CXorf57Q6NSI4 855 aaKnown RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 IL27RAQ6UWB1 636 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 NOP9Q86U38 636 aaKnown RBP23.15■■□□□ 1.3
CLN3-215ENST00000565236 GPT2Q8TD30 523 aa23.15■■□□□ 1.3
CLN3-215ENST00000565236 BIRC7Q96CA5 298 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms