RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 APOPT1Q96IL0 206 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 ZIC5Q96T25 663 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 TRIM56Q9BRZ2 755 aaKnown RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 DHRS4Q9BTZ2 278 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 MRPL4Q9BYD3 311 aaKnown RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 CITO14578 2027 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 TRIP11Q15643 1979 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 KRBA1A5PL33 1030 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 SLC15A5A6NIM6 579 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 SDR42E2A6NKP2 422 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 SIN3BO75182 1162 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 CSDE1O75534 798 aaKnown RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 PRKCBP05771 671 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PSMC3P17980 439 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 RPL10P27635 214 aaKnown RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 ARSEP51690 589 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PSMC1P62191 440 aaKnown RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 CUL2Q13617 745 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 GJC2Q5T442 439 aaPredicted RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 SCARA3Q6AZY7 606 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 C17orf99Q6UX52 265 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 ZNF467Q7Z7K2 595 aaPredicted RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 RHPN2Q8IUC4 686 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 TICAM1Q8IUC6 712 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PEX5LQ8IYB4 626 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 FBXW8Q8N3Y1 598 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 TMCO5AQ8N6Q1 288 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 HHIPL1Q96JK4 782 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 NLRP4Q96MN2 994 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 ANAPC7Q9UJX3 599 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 ITM2BQ9Y287 266 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PCDHB2Q9Y5E7 798 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 CORINQ9Y5Q5 1042 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 LOC100653049A0A140TA62 436 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 FAM189A1O60320 539 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 KDM1AO60341 852 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 TOM1L1O75674 476 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 KRT34O76011 436 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 INHBBP09529 407 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 ITGAXP20702 1163 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 MRPS22P82650 360 aaKnown RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 MSS51Q4VC12 460 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 FAM182AQ5T1J6 154 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PLPPR4Q7Z2D5 763 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 BRSK2Q8IWQ3 736 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 ZBTB8OSQ8IWT0 167 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 LILRA2Q8N149 483 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PTCD2Q8WV60 388 aaKnown RBP13.62□□□□□ -0.23
CLK3-206ENST00000562078 CPA5Q8WXQ8 436 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 C7orf26Q96N11 449 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PPCSQ9HAB8 311 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 PPME1Q9Y570 386 aa13.62□□□□□ -0.23
CLK3-206ENST00000562078 ANKRD34BA5PLL1 514 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 A6NL46 340 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 CYB561D2O14569 222 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 KLF11O14901 512 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 PFDN6O15212 129 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 CCDC130P13994 396 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 ENDOUP21128 410 aaKnown RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 ACO1P21399 889 aaKnown RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 SSTR3P32745 418 aaPredicted RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 TRPC1P48995 793 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 CCT8P50990 548 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 ADGRE1Q14246 886 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 MXD4Q14582 209 aaPredicted RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 NR1D2Q14995 579 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 CHI3L2Q15782 390 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 C2CD6Q53TS8 623 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 TMEM270Q6UE05 265 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 NPLOC4Q8TAT6 608 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 NLRP7Q8WX94 980 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 TAMM41Q96BW9 452 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 SGF29Q96ES7 293 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 ACO2Q99798 780 aaKnown RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 WDR83Q9BRX9 315 aaKnown RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 TINF2Q9BSI4 451 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 MTMR12Q9C0I1 747 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 RIMS3Q9UJD0 308 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 POU2F3Q9UKI9 436 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 PCDHB4Q9Y5E5 795 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 IGKV6-21A0A0C4DH24 114 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 GAS2O43903 313 aaKnown RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 H6PDO95479 791 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 HSPA8P11142 646 aaKnown RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 UNGP13051 313 aaPredicted RBP13.61□□□□□ -0.23
CLK3-206ENST00000562078 GJC1P36383 396 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 TM4SF4P48230 202 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 CLCN3P51790 818 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 BMXP51813 675 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 BNIP3Q12983 259 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 RGS21Q2M5E4 152 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 LLGL2Q6P1M3 1020 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 CCDC33Q8N5R6 958 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 HPS1Q92902 700 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 GID8Q9NWU2 228 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 DKK3Q9UBP4 350 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 DNPEPQ9ULA0 475 aa13.61□□□□□ -0.23
CLK3-206ENST00000562078 A0A1W2PPW3 197 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 CFHP08603 1231 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms