RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 DNTTP04053 509 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 SRPRAP08240 638 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 CD59P13987 128 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 TFE3P19532 575 aaPredicted RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 EEF1GP26641 437 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 CDH5P33151 784 aaPredicted RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 NOS2P35228 1153 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 MATKP42679 507 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 GABRB2P47870 512 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 NUMBP49757 651 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 RNASE9P60153 205 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 ZNF252P-AS1Q0IIN9 211 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 GRIK2Q13002 908 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 AUHQ13825 339 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 ARID5BQ14865 1188 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 HNRNPA1L2Q32P51 320 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 TAF3Q5VWG9 929 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 ZNF776Q68DI1 518 aaPredicted RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 FBXL22Q6P050 247 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 RBM43Q6ZSC3 357 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 NOP9Q86U38 636 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 ZDHHC17Q8IUH5 632 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 DHX40Q8IX18 779 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 CCAR2Q8N163 923 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 ZCCHC9Q8N567 271 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 KDM1BQ8NB78 822 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 TMEM35BQ8NCS4 154 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 C1orf216Q8TAB5 229 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 IGSF8Q969P0 613 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 RPL10LQ96L21 214 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 STK33Q9BYT3 514 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 BTBD1Q9H0C5 482 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 PCED1AQ9H1Q7 454 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 RSPH9Q9H1X1 276 aaPredicted RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 VPS16Q9H269 839 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 PDCL3Q9H2J4 239 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 SLC32A1Q9H598 525 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 DNAAF2Q9NVR5 837 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 TAB2Q9NYJ8 693 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 EIF2B4Q9UI10 523 aaKnown RBP10.62□□□□□ -0.71
CLK3-205ENST00000561673 HS3ST4Q9Y661 456 aa10.62□□□□□ -0.71
CLK3-205ENST00000561673 CHD8Q9HCK8 2581 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 TARSL2A2RTX5 802 aaKnown RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 F8VZ95 297 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 M0QYT0 321 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 GJB3O75712 270 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 ADCY5O95622 1261 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 SEMA4FO95754 770 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 PDGFRAP16234 1089 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 MZF1P28698 734 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 STK19P49842 368 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 KLK7P49862 253 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 CENPCQ03188 943 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 SLC12A1Q13621 1099 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 KRT31Q15323 416 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 C2CD6Q53TS8 623 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 RABGAP1LQ5R372 815 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 TTC39BQ5VTQ0 682 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 OTUD1Q5VV17 481 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 CDKAL1Q5VV42 579 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 CXorf57Q6NSI4 855 aaKnown RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 C14orf80Q86SX3 495 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 ERICH1Q86X53 443 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 XYLT1Q86Y38 959 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 CPA5Q8WXQ8 436 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 SNX19Q92543 992 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 NT5C3BQ969T7 300 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 C18orf8Q96DM3 657 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 RPRD1AQ96P16 312 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 FAM129BQ96TA1 746 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 NPY6RQ99463 290 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 ZDHHC5Q9C0B5 715 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 PABPC3Q9H361 631 aaKnown RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 WDCPQ9H6R7 721 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 SGK2Q9HBY8 427 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 PIGVQ9NUD9 493 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 FANCLQ9NW38 375 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 RRN3Q9NYV6 651 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLK3-205ENST00000561673 SERGEFQ9UGK8 458 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 VANGL2Q9ULK5 521 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 WASF3Q9UPY6 502 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 SLCO1B1Q9Y6L6 691 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 MUC22E2RYF6 1773 aaPredicted RBP10.61□□□□□ -0.71
CLK3-205ENST00000561673 CKAP5Q14008 2032 aa10.61□□□□□ -0.71
CLK3-205ENST00000561673 ITIH6Q6UXX5 1313 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 CEP192Q8TEP8 1941 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 ACACBO00763 2458 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 PCDH15Q96QU1 1955 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 EDDM13A0A1B0GTR0 161 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 A0A1B0GVM2 712 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 SPAARA0A1B0GVQ0 90 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 TCAF2A6NFQ2 919 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 I6L893 689 aaPredicted RBP10.6□□□□□ -0.71
CLK3-205ENST00000561673 MID1O15344 667 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 RNASEH1O60930 286 aaKnown RBP10.6□□□□□ -0.71
CLK3-205ENST00000561673 PAGE1O75459 146 aa10.6□□□□□ -0.71
CLK3-205ENST00000561673 LSM8O95777 96 aaKnown RBP10.6□□□□□ -0.71
CLK3-205ENST00000561673 TOP3BO95985 862 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms