RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 KCTD15Q96SI1 283 aaPredicted RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 REPIN1Q9BWE0 567 aaKnown RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 MIR1-1HGQ9H1L0 117 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 ZFP14Q9HCL3 533 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 OLA1Q9NTK5 396 aaKnown RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 ABCB8Q9NUT2 735 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 DUS2Q9NX74 493 aaKnown RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 ZFATQ9P243 1243 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 ZC3H7BQ9UGR2 993 aaKnown RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 LCMT1Q9UIC8 334 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 PLAAQ9Y263 795 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 RPS6KL1Q9Y6S9 549 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF197O14709 1029 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 DNAJC6O75061 913 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 AVILO75366 819 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FECHP22830 423 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FSHRP23945 695 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 OAS2P29728 719 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CHKAP35790 457 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CD86P42081 329 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 HDAC4P56524 1084 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PDK2Q15119 407 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 EML3Q32P44 896 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 RETSATQ6NUM9 610 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 OTOP3Q7RTS5 596 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PTAR1Q7Z6K3 402 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CPLX4Q7Z7G2 160 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 MRPL10Q7Z7H8 261 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TP53INP2Q8IXH6 220 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SH2D3CQ8N5H7 860 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SPATA22Q8NHS9 363 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 UCMAQ8WVF2 138 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 HTR3CQ8WXA8 447 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SUSD6Q92537 303 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CSPG4P5Q96PW8 444 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 RNF157Q96PX1 679 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SEMA3CQ99985 751 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ZYG11BQ9C0D3 744 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SCUBE2Q9NQ36 999 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 MARCH5Q9NX47 278 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FCF1Q9Y324 198 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PCDHB9Q9Y5E1 797 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PCDHGC4Q9Y5F7 938 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 BDP1A6H8Y1 2624 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 E5RI56 91 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 E9PAM4 449 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FAM72CH0Y354 149 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 H0YHG0 523 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 RASGRF2O14827 1237 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 STX7O15400 261 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 MAP3K13O43283 966 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 DAB1O75553 588 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 BAIAP3O94812 1187 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ASGR2P07307 311 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GSTA1P08263 222 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GSTA2P09210 222 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 HAPLN1P10915 354 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 HLA-EP13747 358 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 NFKB1P19838 968 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TACR2P21452 398 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 MAT2AP31153 395 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GKP32189 559 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 OLIG2Q13516 323 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GALNT3Q14435 633 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CASP8Q14790 479 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GLIPR1L2Q4G1C9 344 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ATXN7L2Q5T6C5 722 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FAM72AQ5TYM5 149 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ARHGAP17Q68EM7 881 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FAM72DQ6L9T8 149 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 C3orf62Q6ZUJ4 267 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CCDC91Q7Z6B0 441 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF598Q86UK7 904 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FAM72BQ86X60 149 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CMTR2Q8IYT2 770 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 RGL4Q8IZJ4 473 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 C4orf33Q8N1A6 199 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 BBOF1Q8ND07 529 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PDZD8Q8NEN9 1154 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 NAT14Q8WUY8 206 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 DDX1Q92499 740 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ATP6V1E2Q96A05 226 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 RMDN2Q96LZ7 410 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 XPO6Q96QU8 1125 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ERP44Q9BS26 406 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TMEM175Q9BSA9 504 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CRISPLD1Q9H336 500 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ARHGEF4Q9NR80 690 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 C20orf96Q9NUD7 363 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 IRAK4Q9NWZ3 460 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 DEC1Q9P2X7 70 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 UBA2Q9UBT2 640 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 LIMD1Q9UGP4 676 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PCDHGC3Q9UN70 934 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SQORQ9Y6N5 450 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 RANBP2P49792 3224 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CABIN1Q9Y6J0 2220 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 KCNU1A8MYU2 1149 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 COCHO43405 550 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms