RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MAPK8P45983 427 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 SLC6A11P48066 632 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 DAOAP59103 153 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 YWHAGP61981 247 aaKnown RBP eCLIP12.21□□□□□ -0.45
LDLR-212ENST00000560467 RPL7AP62424 266 aaKnown RBP12.21□□□□□ -0.45
LDLR-212ENST00000560467 ARL13BQ3SXY8 428 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 PPP1R15BQ5SWA1 713 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 MEI1Q5TIA1 1274 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 PM20D1Q6GTS8 502 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 BEND5Q7L4P6 421 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 SLFN11Q7Z7L1 901 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 C12orf40Q86WS4 652 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 ABCA7Q8IZY2 2146 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 LRRC57Q8N9N7 239 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 MNS1Q8NEH6 495 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 ZMIZ2Q8NF64 920 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 CCDC26Q8TAB7 109 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 FBXO32Q969P5 355 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 PBKQ96KB5 322 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 NACA2Q9H009 215 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 OLA1Q9NTK5 396 aaKnown RBP12.21□□□□□ -0.45
LDLR-212ENST00000560467 DDX56Q9NY93 547 aaKnown RBP12.21□□□□□ -0.45
LDLR-212ENST00000560467 MBD1Q9UIS9 605 aaPredicted RBP12.21□□□□□ -0.45
LDLR-212ENST00000560467 SALL4Q9UJQ4 1053 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 HYOU1Q9Y4L1 999 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 CPQQ9Y646 472 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 EML5Q05BV3 1969 aa12.21□□□□□ -0.46
LDLR-212ENST00000560467 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 ZNF840PA6NDX5 716 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 C2CD4BA6NLJ0 364 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 SGK1O00141 431 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 KCNK3O14649 394 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 ENC1O14682 589 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 DAB1O75553 588 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 CEACAM1P13688 526 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 PCK1P35558 622 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 TIE1P35590 1138 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 PTGER3P43115 390 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 PTPN9P43378 593 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 RWDD2BP57060 319 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 KDSRQ06136 332 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 CKAP4Q07065 602 aaKnown RBP12.2□□□□□ -0.46
LDLR-212ENST00000560467 DHCR24Q15392 516 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 SLC25A52Q3SY17 297 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 BOLA3Q53S33 107 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 TRIM61Q5EBN2 209 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 EMC10Q5UCC4 262 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 LRRC38Q5VT99 294 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 BSPRYQ5W0U4 402 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 SCYL2Q6P3W7 929 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 NT5DC3Q86UY8 548 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 MAP7D3Q8IWC1 876 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 TMEFF1Q8IYR6 380 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 EMC1Q8N766 993 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 NIPA2Q8N8Q9 360 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 IL17RCQ8NAC3 791 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 TXNDC5Q8NBS9 432 aaKnown RBP12.2□□□□□ -0.46
LDLR-212ENST00000560467 OVCA2Q8WZ82 227 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 GATA6Q92908 595 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 RNF34Q969K3 372 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 BTBD6Q96KE9 485 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 SCNM1Q9BWG6 230 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 RNF38Q9H0F5 515 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 FAM204AQ9H8W3 233 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 FSCN3Q9NQT6 498 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 TRPM5Q9NZQ8 1165 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 CFAP97Q9P2B7 532 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 SLC12A6Q9UHW9 1150 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 EVLQ9UI08 416 aaPredicted RBP12.2□□□□□ -0.46
LDLR-212ENST00000560467 TMEM59LQ9UK28 342 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 SNX12Q9UMY4 172 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 USP3Q9Y6I4 520 aa12.2□□□□□ -0.46
LDLR-212ENST00000560467 FASNP49327 2511 aaKnown RBP12.19□□□□□ -0.46
LDLR-212ENST00000560467 TCRBV5S1A1TA0A578 114 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 YJEFN3A6XGL0 299 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 HHLA1C9JL84 531 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 E7ENQ6 273 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 TNFRSF10BO14763 440 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 PSTPIP1O43586 416 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 HYAL3O43820 417 aaPredicted RBP12.19□□□□□ -0.46
LDLR-212ENST00000560467 ADAM23O75077 832 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 ALDH1A2O94788 518 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 SLC2A3P11169 496 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 P2RY2P41231 377 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 SULT1E1P49888 294 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 DNA2P51530 1060 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 CACNA2D1P54289 1103 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 SLC7A9P82251 487 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 MRPS21P82921 87 aaKnown RBP12.19□□□□□ -0.46
LDLR-212ENST00000560467 ATP11AP98196 1134 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 MTA1Q13330 715 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 COL9A2Q14055 689 aaPredicted RBP12.19□□□□□ -0.46
LDLR-212ENST00000560467 SEL1L2Q5TEA6 688 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 LPCAT2Q7L5N7 544 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 RCOR2Q8IZ40 523 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 DEFB106AQ8N104 65 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 JOSD2Q8TAC2 188 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 SCAMP5Q8TAC9 235 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 FAM172AQ8WUF8 416 aa12.19□□□□□ -0.46
LDLR-212ENST00000560467 HMGB4Q8WW32 186 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms