RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KCNK9Q9NPC2 374 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 G3BP2Q9UN86 482 aaKnown RBP5.08□□□□□ -1.6
VPS13C-208ENST00000559119 MAN2B2Q9Y2E5 1009 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 PNMA6EA0A0J9YXQ4 647 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 GXYLT2A0PJZ3 443 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 RGS14O43566 566 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 NEURL1O76050 574 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 LCKP06239 509 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 PRSS2P07478 247 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 ITGA5P08648 1049 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 ALDOCP09972 364 aaKnown RBP5.07□□□□□ -1.6
VPS13C-208ENST00000559119 ATF3P18847 181 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 COMPP49747 757 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-208ENST00000559119 CASP5P51878 434 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 Q0VFX4 171 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 GPS2Q13227 327 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 ADGRF3Q8IZF5 1079 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 TXLNBQ8N3L3 684 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 TIFAQ96CG3 184 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 PAAF1Q9BRP4 392 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 MAGEH1Q9H213 219 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 RGL1Q9NZL6 768 aa5.07□□□□□ -1.6
VPS13C-208ENST00000559119 KIF3BO15066 747 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 ZNF432O94892 652 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 GAS8-AS1O95177 125 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 ALDOAP04075 364 aaKnown RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 DSC1Q08554 894 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 DNTTIP2Q5QJE6 756 aaKnown RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 FNBP1LQ5T0N5 605 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 ANKRD40Q6AI12 368 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 TMEM88Q6PEY1 159 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 FAM83HQ6ZRV2 1179 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 FOXP4Q8IVH2 680 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 GLIS1Q8NBF1 620 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 TSR2Q969E8 191 aaKnown RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 ADAD1Q96M93 576 aaKnown RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 OSBPL5Q9H0X9 879 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-208ENST00000559119 FSCN3Q9NQT6 498 aa5.06□□□□□ -1.6
VPS13C-208ENST00000559119 NKX2-8O15522 239 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 DHHO43323 396 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 TAF5LO75529 589 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 ARL13BQ3SXY8 428 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 DCAF12L2Q5VW00 463 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 CAMK1DQ8IU85 385 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 SLC25A41Q8N5S1 370 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 WFIKKN2Q8TEU8 576 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 CATSPERBQ9H7T0 1116 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 IL21RQ9HBE5 538 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 DDX21Q9NR30 783 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS13C-208ENST00000559119 HELLSQ9NRZ9 838 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 CA14Q9ULX7 337 aa5.05□□□□□ -1.6
VPS13C-208ENST00000559119 CKAP5Q14008 2032 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 FAM234BA2RU67 622 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 C3orf70A6NLC5 250 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-208ENST00000559119 PRSS47A8MTI9 375 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 BTBD18B2RXH4 712 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 LINC01565O15544 149 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 GRID2O43424 1007 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 LDB3O75112 727 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 GLUD1P00367 558 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 LCATP04180 440 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 CHRNA5P30532 468 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 GLUD2P49448 558 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 TRAF1Q13077 416 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 AAK1Q2M2I8 961 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 ERAP2Q6P179 960 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 FBXO38Q6PIJ6 1188 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 PRSS57Q6UWY2 283 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 ZNF329Q86UD4 541 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 EXD3Q8N9H8 876 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 ENGASEQ8NFI3 743 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 WDR77Q9BQA1 342 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-208ENST00000559119 TXNRD2Q9NNW7 524 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 PNRC2Q9NPJ4 139 aaKnown RBP5.04□□□□□ -1.6
VPS13C-208ENST00000559119 RNF146Q9NTX7 359 aa5.04□□□□□ -1.6
VPS13C-208ENST00000559119 DENND3A2RUS2 1198 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 CLEC18AA5D8T8 446 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 SLC16A2P36021 539 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 STAT1P42224 750 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 PRIM2P49643 509 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 ZP1P60852 638 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 ABATP80404 500 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 TLE3Q04726 772 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 IGFN1Q86VF2 1251 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 WDR75Q8IWA0 830 aaKnown RBP5.03□□□□□ -1.6
VPS13C-208ENST00000559119 FAM217AQ8IXS0 508 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 FAM185AQ8N0U4 392 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 CLEC18CQ8NCF0 446 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 IP6K1Q92551 441 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 GDF15Q99988 308 aa5.03□□□□□ -1.6
VPS13C-208ENST00000559119 KCNJ18B7U540 433 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 IGFBP2P18065 325 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 GRK5P34947 590 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 RFX5P48382 616 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-208ENST00000559119 POLE2P56282 527 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 TAS2R50P59544 299 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 SELENOVP59797 346 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 ERVFC1-1P60608 527 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 IFIT5Q13325 482 aaKnown RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms