RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 HJURPQ8NCD3 748 aaPredicted RBP9.9□□□□□ -0.82
CUX1-216ENST00000558469 PCDH19Q8TAB3 1148 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 NXPE3Q969Y0 559 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 MARVELD3Q96A59 401 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 PBKQ96KB5 322 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 RNF157Q96PX1 679 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 FAM83CQ9BQN1 747 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ZNF670Q9BS34 389 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 HEMGNQ9BXL5 484 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 CARD9Q9H257 536 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 CATSPERBQ9H7T0 1116 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ARHGEF4Q9NR80 690 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 IGSF9Q9P2J2 1179 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 RCOR3Q9P2K3 495 aaPredicted RBP9.9□□□□□ -0.82
CUX1-216ENST00000558469 PRKAG3Q9UGI9 489 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 NEU3Q9UQ49 428 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 SAR1BQ9Y6B6 198 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 OTOL1A6NHN0 477 aaPredicted RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 ZNF487B1APH4 448 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 H0Y626 953 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ZNF185O15231 689 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 FGF10O15520 208 aaPredicted RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 NFATC1O95644 943 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ADH1CP00326 375 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 CYP17A1P05093 508 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 PRLRP16471 622 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 RHOQP17081 205 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 TCP1P17987 556 aaKnown RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 ERCC2P18074 760 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 HOXC13P31276 330 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 CDH4P55283 916 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 DYNLT1P63172 113 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ADCY2Q08462 1091 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 RUNX3Q13761 415 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 DHCR24Q15392 516 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 TAZQ16635 292 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 TTC39BQ5VTQ0 682 aaPredicted RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 TMCO3Q6UWJ1 677 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 TFAP2DQ7Z6R9 452 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ADAT2Q7Z6V5 191 aaKnown RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 CARNMT1Q8N4J0 409 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 SLC44A3Q8N4M1 653 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 PQLC3Q8N755 202 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 TTC8Q8TAM2 541 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 COG1Q8WTW3 980 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ATXN2LQ8WWM7 1075 aaKnown RBP9.89□□□□□ -0.83
CUX1-216ENST00000558469 FAF2Q96CS3 445 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 P2RY11Q96G91 374 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 MS4A14Q96JA4 679 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 HERPUD2Q9BSE4 406 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 BBS2Q9BXC9 721 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 OSBPL8Q9BZF1 889 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 BRD9Q9H8M2 597 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ECT2Q9H8V3 914 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 HPS4Q9NQG7 708 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ETNK2Q9NVF9 386 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 GTSE1Q9NYZ3 720 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 MFHAS1Q9Y4C4 1052 aa9.89□□□□□ -0.83
CUX1-216ENST00000558469 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 A0A1B0GVM2 712 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 TCAF2A6NFQ2 919 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 WASH4PA8MWX3 477 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CES2O00748 559 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 APOL1O14791 398 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 DCLK1O15075 740 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CST8O60676 142 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CLDN11O75508 207 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 URI1O94763 535 aaPredicted RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 LUC7L3O95232 432 aaKnown RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 ADH5P11766 374 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 TYRP14679 529 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 HOXD9P28356 352 aaPredicted RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 OR1E1P30953 314 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 PTPN7P35236 360 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 AMPD2Q01433 879 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 GAD2Q05329 585 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 ZP2Q05996 745 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 NR1H3Q13133 447 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 ZNF177Q13360 481 aaPredicted RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 TFDP2Q14188 446 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 PPP2R5EQ16537 467 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 DNTTIP2Q5QJE6 756 aaKnown RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 MPP7Q5T2T1 576 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CCDC181Q5TID7 509 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 FYB2Q5VWT5 728 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 C1orf228Q6PIY5 440 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CHST9Q7L1S5 443 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 NLRP14Q86W24 1093 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 MFN1Q8IWA4 741 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CCDC117Q8IWD4 279 aaPredicted RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 CPA6Q8N4T0 437 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 NAT16Q8N8M0 369 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 RTL3Q8N8U3 475 aaKnown RBP9.88□□□□□ -0.83
CUX1-216ENST00000558469 KIF18AQ8NI77 898 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CSGALNACT1Q8TDX6 532 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 CAPZA3Q96KX2 299 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 ASB2Q96Q27 587 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 NDFIP2Q9NV92 336 aa9.88□□□□□ -0.83
CUX1-216ENST00000558469 TMEM248Q9NWD8 314 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms