RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 USP36Q9P275 1121 aaKnown RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 DNMT3LQ9UJW3 386 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 NUDT5Q9UKK9 219 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 GPC6Q9Y625 555 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 PTPRQQ9UMZ3 2332 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 METTL12A8MUP2 240 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 H0Y8X5 98 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 NPC1O15118 1278 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 TNFSF14O43557 240 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 RHOBTB3O94955 611 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 CLSTN1O94985 981 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 KIF20AO95235 890 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 HLA-DRAP01903 254 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 MAP3K7CLP57077 242 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 CFHR1Q03591 330 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 ENPP2Q13822 863 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 STARD3Q14849 445 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 TRIP4Q15650 581 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-220ENST00000556486 IL27RAQ6UWB1 636 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 INTS8Q75QN2 995 aaKnown RBP10.48□□□□□ -0.73
SCFD1-220ENST00000556486 GPRIN1Q7Z2K8 1008 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 TMPRSS6Q8IU80 811 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 ZNF366Q8N895 744 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 SORCS1Q8WY21 1168 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 JAKMIP2Q96AA8 810 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 SIPA1Q96FS4 1042 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 NAF1Q96HR8 494 aaKnown RBP10.48□□□□□ -0.73
SCFD1-220ENST00000556486 HSH2DQ96JZ2 352 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 TWNKQ96RR1 684 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 NT5C1AQ9BXI3 368 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 IMPG2Q9BZV3 1241 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 NMUR1Q9HB89 426 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 ITM2CQ9NQX7 267 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 FTSJ1Q9UET6 329 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 LSM7Q9UK45 103 aaKnown RBP10.48□□□□□ -0.73
SCFD1-220ENST00000556486 ANKRD6Q9Y2G4 727 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 FRMD4BQ9Y2L6 1034 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 SLC27A6Q9Y2P4 619 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 NFE2L3Q9Y4A8 694 aa10.48□□□□□ -0.73
SCFD1-220ENST00000556486 ST8SIA5O15466 376 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CYP26A1O43174 497 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CALUO43852 315 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 PENKP01210 267 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CISD3P0C7P0 127 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 ACADMP11310 421 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 JUPP14923 745 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 PFKFB1P16118 471 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 PRKCHP24723 683 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 GTF2H1P32780 548 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 ACSL1P33121 698 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 PIK3CAP42336 1068 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 GRK6P43250 576 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 SMCPP49901 116 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 VAMP7P51809 220 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 AFF3P51826 1226 aaKnown RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 WDR4P57081 412 aaKnown RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 TARDBPQ13148 414 aaKnown RBP eCLIP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 PKP1Q13835 747 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 GEN1Q17RS7 908 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 ZCWPW2Q504Y3 356 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 SPOPLQ6IQ16 392 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 DBX2Q6ZNG2 339 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 TADA2BQ86TJ2 420 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 GUF1Q8N442 669 aaKnown RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 TTC39CQ8N584 583 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 TAS1R2Q8TE23 839 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 PRCCQ92733 491 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 NXPE2Q96DL1 559 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CYFIP2Q96F07 1278 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CDK5RAP1Q96SZ6 601 aaKnown RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 DUSP16Q9BY84 665 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 UBXN6Q9BZV1 441 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 SEMA4CQ9C0C4 833 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 APOBEC3GQ9HC16 384 aaKnown RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 TM9SF3Q9HD45 589 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 FAM49BQ9NUQ9 324 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 ZNF510Q9Y2H8 683 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 KCNMB2Q9Y691 235 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CABIN1Q9Y6J0 2220 aa10.47□□□□□ -0.73
SCFD1-220ENST00000556486 COL5A1P20908 1838 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-220ENST00000556486 CAPN9O14815 690 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 RRP8O43159 456 aaKnown RBP10.46□□□□□ -0.73
SCFD1-220ENST00000556486 SYNCRIPO60506 623 aaKnown RBP10.46□□□□□ -0.73
SCFD1-220ENST00000556486 STC2O76061 302 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 FSBPO95073 299 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 EPHX1P07099 455 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 RARGP13631 454 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 ACO1P21399 889 aaKnown RBP10.46□□□□□ -0.73
SCFD1-220ENST00000556486 NR2F2P24468 414 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 CCT8P50990 548 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 COPAP53621 1224 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 PPP3CAQ08209 521 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 SUZ12Q15022 739 aaKnown RBP10.46□□□□□ -0.73
SCFD1-220ENST00000556486 TAF1BQ53T94 588 aaPredicted RBP10.46□□□□□ -0.73
SCFD1-220ENST00000556486 C6orf118Q5T5N4 469 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 CEP135Q66GS9 1140 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 SCD5Q86SK9 330 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 CADM4Q8NFZ8 388 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 DNAI2Q9GZS0 605 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 TMEM8AQ9HCN3 771 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms