RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 YBX1P67809 324 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SP2Q02086 613 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 FSTL1Q12841 308 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TGFBIQ15582 683 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF699Q32M78 642 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 EPGNQ6UW88 154 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 XKR5Q6UX68 686 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 DLK2Q6UY11 383 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PACS1Q6VY07 963 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 Q6ZNX1 250 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 LZTR1Q8N653 840 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 C7orf31Q8N865 590 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SMYD1Q8NB12 490 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF280CQ8ND82 737 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 GSDMBQ8TAX9 411 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 GIPC3Q8TF64 312 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TRAPPC12Q8WVT3 735 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ARNTL2Q8WYA1 636 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 LRTOMTQ8WZ04 291 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RNF157Q96PX1 679 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CGRRF1Q99675 332 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CCT7Q99832 543 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TEX13BQ9BXU2 312 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SLC4A5Q9BY07 1137 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 XYLT2Q9H1B5 865 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ACAD9Q9H845 621 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TIMMDC1Q9NPL8 285 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RNF19AQ9NV58 838 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SLC38A7Q9NVC3 462 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 DNAJC28Q9NX36 388 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 C6orf203Q9P0P8 240 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PIM2Q9P1W9 311 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RSL24D1Q9UHA3 163 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RAB26Q9ULW5 256 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ARHGAP26Q9UNA1 814 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 EFR3BQ9Y2G0 817 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SSUH2Q9Y2M2 353 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SH3GLB1Q9Y371 365 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 STYXL1Q9Y6J8 313 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ACOT8O14734 319 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ADAM23O75077 832 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ATE1O95260 518 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 STAMBPO95630 424 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TNNC2P02585 160 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 OATP04181 439 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 GJB1P08034 283 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ALOX15P16050 662 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CKMT2P17540 419 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CYP3A5P20815 502 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 GLDCP23378 1020 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CDH5P33151 784 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PHKA2P46019 1235 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CREB5Q02930 508 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CDK18Q07002 472 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RALGDSQ12967 914 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 STILQ15468 1287 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 LSM12Q3MHD2 195 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 DALRD3Q5D0E6 543 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 XKR3Q5GH77 459 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 LPCAT2Q7L5N7 544 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TP53INP2Q8IXH6 220 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 IRGQQ8WZA9 623 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TANKQ92844 425 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SLCO4A1Q96BD0 722 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CDHR1Q96JP9 859 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZFRQ96KR1 1074 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 AGAP2Q99490 1192 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CIB1Q99828 191 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NUF2Q9BZD4 464 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SLC38A10Q9HBR0 1119 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NRBP2Q9NSY0 501 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 FAIMQ9NVQ4 179 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RRN3Q9NYV6 651 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SORCS3Q9UPU3 1222 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF638Q14966 1978 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 USP34Q70CQ2 3546 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PDE4DIPQ5VU43 2346 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 G3V2L1 256 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 H0YCG3 227 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 TRDMT1O14717 391 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 LSM8O95777 96 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 FUCA1P04066 466 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 PGK2P07205 417 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 UGT1A6P19224 532 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 TBXAS1P24557 533 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 CD97P48960 835 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 HARS2P49590 506 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 STAT5BP51692 787 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 NIPAL4Q0D2K0 466 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 HADHQ16836 314 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 DCAF6Q58WW2 860 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 MTX3Q5HYI7 312 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 SH2D4BQ5SQS7 431 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 RARS2Q5T160 578 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 FAM102AQ5T9C2 384 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 NANOGP8Q6NSW7 305 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 CHST15Q7LFX5 561 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 PCDH20Q8N6Y1 951 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 PPP1R13LQ8WUF5 828 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms